When Raj and Auggie are watching the ship 'Judgement Day' from the screens in the control room, you can see that the headsets Raj and Auggie are using, are changing in between takes. The type of microphone on the headsets change.
When Wade is heard saying, "Picking you up," his mouth does not match his words.
When Sophon says 'The universe has more dimensions than the three we occupy' someone seems to forget Time. If you say 'Physical dimension, yes, but if not, we live in a 4 dimensions universe.