Mendez2004 PDF
Mendez2004 PDF
Received 7 July 2003; received in revised form 17 November 2003; accepted 18 November 2003
Abstract
   The bacteriophage elution procedure described further after adsorption to acetate–nitrate cellulose membrane filters allows better recovery
of phages concentrated from 1 l of water than elution proceduresm used previously. The improvement is due to the combined effect of the
eluent (3% (w/v) beef extract, 3% (v/v) Tween 80, 0.5 M NaCl, pH 9.0) and the application of ultrasound instead of agitation or swirling.
Average recovery of somatic coliphages, 82 ± 7%, was the greatest, and that of phages infecting Bacteroides fragilis, 56 ± 8%, the lowest,
with intermediate values for F-specific and F-specific RNA bacteriophages. Thus, the method allowed recovery of over 56% for all the phages
suggested as surrogate indicators. The method was then validated according to an International Standardisation Organisation validation
standard procedure and implemented in routine laboratories, which obtained reproducible results.
© 2003 Elsevier B.V. All rights reserved.
0166-0934/$ – see front matter © 2003 Elsevier B.V. All rights reserved.
doi:10.1016/j.jviromet.2003.11.013
20                                   J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25
   It is well known that concentration efficiencies obtained              for somatic coliphages, F-specific RNA bacteriophages
when testing natural samples for viruses are frequently sig-              and B. fragilis phages, respectively were used as con-
nificantly lower than those reported in the publications de-              trols in enumeration tests and for spiking of water in the
scribing the method as developed with reference laboratory                method development experiments indicated further. As well,
bacteriophages. Also, Round Robin tests among different                   sewage derived phage stocks for SOMCPH, F-TOTPH,
laboratories show significant differences in concentration ef-            F-RNAPH, BFRPHHSP40 and BFRPHRYC2056 were
ficiencies between the different laboratories (Melnick et al.,            prepared as indicated further for method validation
1984; Vilaginés et al., 1997). Many factors other than the                studies.
concentration method itself seem to influence the recovery:
the characteristics of the water sample, the amount of sam-               2.3. Spiking phage suspensions
ple, the numbers of bacteriophages spiked and the bacterio-
phages groups themselves. Because of the many sources of                     Two kinds of phage suspensions were used.
uncertainty it is important to establish “standardised” pro-
cedures for evaluating concentration procedures, based on                 2.3.1. For developing the modified method
both reliability and efficiency. Recently, a standard proce-                 Volumes of suspensions of phages X174, MS2 and
dure for validation of methods for concentration of bacte-                B40-8 containing between 1.5 × 104 and 5.0 × 105 pfu per
riophages from water has been adopted by the International                ml were added to the water sample to be submitted to con-
Standardisation Organisation (Anonymous, 2002). This pro-                 centration to reach a final concentration of 60–200 plaque
cedure does not give specific details of concentration meth-              forming units per litre. After vigorous agitation, phages
ods, but provides a general framework for the evaluation                  in the sample were enumerated, either directly or after
of the suitability of a particular method for a given type                dilution.
and volume of water. Secondly, it also discusses how to use
this information in establishing the actual values of bacte-              2.3.2. For validating the modified method
riophages in a given sample taken into account the numbers                   Sewage derived phage stocks were prepared as indicated
recovered after concentration.                                            in the ISO 10705-3 Standard (Anonymous, 2003). Briefly,
   We describe modifications introduced to the method first               primary or secondary sewage effluent was either centrifuged
reported by Sobsey et al. (1990) and then modified by Sinton              for 10 min at 2000 × g or filtered through a 12 m pore
et al. (1996). The modifications introduced were examined                 size membrane filter as described in Mendez et al. (2002).
for their impact upon the concentration of phages belonging               Target bacteriophages were enumerated for initial titre. The
to the three groups reported above as potential indicators                phage suspensions were stored at 4 ◦ C until the enumeration
from 1 l of drinking water. The final modified method was                 results were available. If necessary, the suspensions were
then validated according to the international validation stan-            diluted to obtain concentrations of 60–200 plaque forming
dard mentioned above. Finally, the implementation of the                  units per ml of each of the phage groups. Since their numbers
method in routine microbiology laboratories and the repro-                in sewage are different, these means that three sets of phage
ducibility of the results with sewage derived bacteriophages              spike-stocks were prepared. Glycerol was added to a final
in these laboratories were assessed.                                      concentration of 10% (v/v). Then, these suspensions were
                                                                          distributed in 10 ml volumes in plastic containers, and frozen
2. Materials and methods                                                  at −20 or −70 ◦ C.
                                                                             To ensure that sewage derived phages were distributed at
2.1. Phage assay                                                          random within and between the containers, the within and
                                                                          between containers homogeneity was tested. Two contain-
   Enumeration of bacteriophages was done by determin-                    ers for each phage group suspension (somatic coliphages,
ing the number of plaque forming units (pfu) by the dou-                  F-specific/F-specific RNA phages and phages infecting B.
ble agar layer technique according to standards ISO10705-1                fragilis infecting strains HSP40 and RYC2056) were thawed
(Anonymous, 1995), ISO10705-2 (Anonymous, 2000) and                       at room temperature, and from each container two 0.5 ml
ISO10705-4 (Anonymous, 2002), which describe methods                      aliquots for the target bacteriophages were assayed. The
for the detection and enumeration of F-specific (F-TOTPH)                 counts were then analysed for within (T1 ) and between con-
and F-specific RNA bacteriophages (F-RNAPH), somatic                      tainers (T2 ) homogeneity.
coliphages (SOMCPH) and phages infecting strains HSP40                       T1 is a measure for the variation within one container of
(BFBHSP40) and RYC2056 (BFBRYC2056) of B. fragilis,                       spiking material (replicate variation). T2 is a measure for
respectively.                                                             the variation between different vials of one batch of spiking
                                                                          material.
2.2. Bacteriophages
                                                                                 J
                                                                               I 
                                                                                                     
                                                                                    (zij − zi+ /J) 2
  Phages X174, MS2 and B40-8, recommended by the                         T1 =
Standard ISO methods indicated above as reference phages                                (zi+ /J)
                                                                                 i=1 j=1
                                    J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25                             21
where zij is the number of pfu per analytical portion (j) of             2.4.3. Eluting conditions
vial i, and                                                                 The effect on elution efficiency of swirling agitation and
                                                                         ultrasound was compared as follows. The eluting conditions
        J
                                                                        were assayed with the eluting solution 1 that was confirmed
zi+ =         zij                                                        be the most efficient as indicated in the results section. The
        j=1                                                              swirling agitation of the membrane filter submerged in elut-
                                                                         ing solution was applied as indicated by Sinton et al. (1996).
being the sum of numbers of pfu in all containers counted                Ultrasound was applied by submerging the flask or tube con-
(I, that in this case is 2) and J (in this case 2) the number            taining the membrane filter into an ultrasound cleaning bath
of analytical portions per container. Degrees of freedom for             for 4 min.
T1 are I(J − 1).
                                                                                         70
3. Results                                                                               60
                                                                           % Recovery
                                                                                         50
3.1. Modifications assayed for the phage concentration
method                                                                                   40
                                                                                         30
3.1.1. Amendment of the sample
   The three reference bacteriophages studied (X174, MS2                                20
3.1.4. Bacteriophages remaining in the filters                                        The percentages of phages counted by platting the mem-
   Even applying the best eluting solution and the best elut-                      brane filters varied from 13.5 to 21.6% for somatic col-
ing conditions, non-negligible numbers of phages, ranging                          iphages, 1.8–9.8% for F-specific bacteriophages, 0.8–8.8%
from 1 to 28% depending on the experiments and phages,                             for F-specific RNA phages, 11.6–19.6 for phages infecting
remained in the membrane filter. Consequently, it was rec-                         B. fragilis HSP40 and from 19 to 26.9% for phages infecting
ommended in the proposed method to include the count of                            strain RYC2056 of B. fragilis.
phages retained in the filter as part of the total number of                          The ISO validation procedure was applied to all phages
phages recovered as was recommended in the original meth-                          reported in Fig. 1 and results indicated neither volume ef-
ods (Sobsey et al., 1990; Sinton et al., 1996).                                    fect, nor unacceptable relative standard deviation >0.5 for the
   As a consequence of the results reported in this section,                       five groups of phages studied. The relative standard devia-
the final modified method was established as indicated in                          tions for the concentration efficiencies of the different phages
the Section 2.                                                                     were: 0.19 for somatic coliphages, 0.23 for F-specific bacte-
                                                                                   riophages, 0.24 for F-specific RNA bacteriophages, 0.34 for
3.2. Evaluation and validation of the method                                       bacteriophages infecting B. fragilis HSP40 and 0.28 for bac-
                                                                                   teriophages infecting B. fragilis RYC2056. Therefore, it was
   The recovery efficiency of the method was evaluated for                         concluded that the method is reliable for volumes ranging
natural populations of phage, using phages partially purified                      from 100 ml to 1 l for somatic coliphages, F-specific RNA
from sewage as indicated in the material and methods sec-                          bacteriophages and bacteriophages infecting B. fragilis.
tion. Results expressed as the arithmetic mean of the recover-                        For brevity, only the results corresponding to the
ies for all volumes tested, since as indicated below there was                     F-specific RNA bacteriophage are reported in detail below.
no volume effect, are shown in Fig. 2. Recovery of somatic                            The sewage derived spiking material showed an excellent
coliphages was significantly higher (multiple range test anal-                     homogeneity both within and between vial since values of
ysis using least significant differences between means using                       T1 and T2 were 0.034 and 0.41 well below 5.99 and 3.84
Student’s t-test, P < 0.05) than the recoveries of F-specific,                     indicated in the ISO validation standard.
F-RNA bacteriophages and bacteriophages infecting B.                                  Fig. 3 shows the plotted arithmetic average of the recover-
fragilis. In contrast, the recoveries of F-specific bacterio-                      ies (R(%)) plus the confidence intervals obtained by concen-
phages, F-specific RNA phages and phages infecting B.                              trating phages from 125, 250, 500 and 1000 ml. No signifi-
fragilis were similar (multiple range test analysis using least                    cant differences (ANOVA, P > 0.05) were detected. There
significant differences between means using Student’s t-test,                      was not volume effect in the percentage of phages detected
P > 0.05).                                                                         by platting the membrane filter.
                                                                                      The calculation of the combined (all volumes) recoveries
                                                                                   (R(%)) gave an arithmetic mean average of value of 63.7 with
             100                                                                   a standard deviation of 14.8. The relative standard deviation
              90
              80
                                                                                                  100
              70
                                                                                                   90
              60
                                                                                                   80
% Recovery
              50
                                                                                                   70
              40
                                                                                                   60
                                                                                     % Recovery
              30
                                                                                                   50
              20
                                                                                                   40
              10
                                                                                                   30
               0
                   N=     20      20     20       20           20
                                                                                                   20
                        SOMCPH FTOTPH FRNAPH BFRPHHSP40    BFRPHRYC2056
Phage Group 10
                                                                                                    0
Fig. 2. Average recovery of different groups of sewage derived phage from                               N=    5       5            5            5
1 l of water. (䊐) Indicates the arithmetic mean and bars indicate the 95%                                    125    250 ml       500 ml      1000 ml
confidence intervals. The arithmetic means correspond to the recoveries                                                      Volume
obtained in five tests performed at each of the four volumes. (SOMCPH),
somatic coliphages; (F-TOTPH) F-specific bacteriophages; (F-RNAPH),                Fig. 3. Average recovery of sewage derived F-specific RNA phages from
F-specific RNA bacteriophages; (BFRPHHSP40) bacteriophages infecting               four different volumes. (䊐) Indicates the arithmetic mean and bars indicate
B. fragilis strain HSP40 and (BFRPHRYC2056) bacteriophages infecting               the 95% confidence intervals. Each value corresponds to five independent
of B. fragilis strain RYC2056.                                                     experiments.
24                                                      J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25
              50
                                                                                             seem contradictory, but it should be considered that the so-
              40                                                                             matic coliphages are a very heterogeneous group (Ackerman
              30                                                                             and Nguyen, 1983; Pedroso and Martins, 1995; Muniesa
                                                                                             et al., 1999) and that in municipal sewage the phages of the
              20
                                                                                             family of X174 are not the most abundant (Muniesa, et al.,
              10                                                                             1999).
               0                                                                                The results of the standardised validation procedure in-
               N=     20        21       20        22         20              32
                    SOMCPHc   SOMCPH   FRNAPHc   FRNAPH BFRPHRYC2056c    BFRPHRYC2056        dicate that the method is reproducible and that it can be
                                              Phage Group                                    easily implemented in routine laboratories with highly re-
Fig. 4. Average recoveries obtained by the laboratories participating in
                                                                                             producible results. The validation method used is simple
the interlaboratory exercise utilizing sewage derived phage. (䊐) Indicates                   and allows one to work with naturally occurring phages at
the arithmetic mean and bars indicate the 95% confidence intervals.                          concentrations approaching those found in nature. Some
For each phage group the first value (c) is the one obtained by the                          experiments performed with un-homogeneous phage sus-
central laboratory and the second, the average value obtained by the all                     pensions gave very variable recoveries (data not shown)
participating laboratories. (SOMCPH) somatic coliphages; (F-RNAPH)
F-specific RNA bacteriophages and (BFRPHRYC2056) bacteriophages
                                                                                             and consequently indicated that when working with low
infecting of B. fragilis strain RYC2056.                                                     numbers of phage, the homogeneity of spiking material is
                                                                                             essential for calculating recovery efficiencies of concen-
                                                                                             tration methods. This may explain some extreme results
gave a value of 0.23 well below 0.5 as recommended in the                                    reported in Round Robin exercises when concentrations of
ISO standard.                                                                                low numbers of phages were tested (Melnick et al., 1984).
                                                                                                In our opinion it will be worthwhile to assay the suit-
3.3. Results of the collaborative study                                                      ability of similar approaches for validating concentration
                                                                                             methods for animal viruses and oocysts of protozoa as
   Results expressed as the arithmetic mean of the                                           Cryptosporidium.
recoveries ± the confidence intervals obtained by all the
participating laboratories are shown in Fig. 4, with the
central laboratory recoveries isolated for comparison In the                                 Acknowledgements
figure are also reported the values obtained. Though not
significantly different (Student’s t-test for of each group of                                 This study was partially supported by REN2002-04035-
bacteriophages, P > 0.05), the average arithmetic mean re-                                   C03-03/HID from CICYT, Ministerio de Ciencia y Tec-
coveries of somatic coliphages and F-specific phages were                                    nologı́a, Spain; and by grant 1999SGR00023 and CeRBa
lower than those of the validation study, whereas recoveries                                 (Biotechnology Center Reference) from the Generalitat de
of phages infecting Bacteroides were identical.                                              Catalunya.
   As well, the relative standard deviations were 0.27 for
somatic coliphages, 0.40 for F-specific RNA bacteriophages
and 0.36 for bacteriophages infecting B. fragilis RYC2056,                                   References
all well below 0.5.
                                                                                             Ackerman, H.W., Nguyen, T.M., 1983. Sewage coliphages studied by
                                                                                                electronic microscopy. Appl. Environ. Microbiol. 45, 1049–1059.
4. Discussion                                                                                Anonymous, 1995. ISO 10705-1: Water Quality. Detection and Enu-
                                                                                                meration of Bacteriophages. Part 1. Enumeration of F-specific RNA
                                                                                                Bacteriophages. International Standardisation Organisation. Geneva,
   The method reported above introduces some modification                                       Switzerland.
to the methods based in adsorption-elution to acetate–nitrate                                Anonymous, 1998. Standard methods for the examination of water and
cellulose ester membrane filters described first by Sobsey                                      wastewater, 20th. ed. American Public Health Association, Washing-
et al. (1990) and modified further by Sinton et al. (1996). The                                 ton, D.C.
                                                                                             Anonymous, 1999. Statistics program. SPSS for Windows, Version 10.0.6,
modified method demonstrated good recoveries of the three
                                                                                                1989–1999. Statistical Package for Social Sciences Inc. Chicago, IL.
groups of phages suggested as surrogate indicators from 1 l                                  Anonymous, 2000. ISO 10705-2: Water Quality. Detection and Enumer-
of drinking water. Somatic coliphages were recovered more                                       ation of Bacteriophages. Part 2. Enumeration of Somatic Coliphages.
efficiently that the others; however, average recoveries of all                                 International Standardisation Organisation, Geneva, Switzerland.
                                              J. Méndez et al. / Journal of Virological Methods 117 (2004) 19–25                                            25
Anonymous, 2002. ISO 10705-3/FD: Water Quality. Detection and Enu-                 Melnick, J.L., Safferman, R., Rao, V.C., Goyal, S., Berg, G., Dahling,
    meration of Bacteriophages. Part 3. Validation of Methods for Con-                 D.R., Wright, B.A., Akin, E., Stetler, R., Sorber, C., Moore, B.,
    centration of Bacteriophages from Water. International Standardisation             Sobsey, M.D., Moore, R., Lewis, A.L., Wellings, F.M., 1984. Round
    Organisation. Geneva, Switzerland.                                                 Robin investigation of methods for the recovery of poliovirus from
Anonymous, 2003. ISO 10705-4: Water Quality. Detection and Enumera-                    drinking water. Appl. Environ. Microbiol. 47, 144–150.
    tion of Bacteriophages. Part 4. Enumeration of Bacteriophages Infect-          Mendez, J., Jofre, J., Lucena, F., Contreras, N., Mooijman, K., Araujo, R.,
    ing Bacteroides fragilis. International Standardisation Organisation.              2002. Conservation of phage reference materials and water simples
    Geneva, Switzerland.                                                               containing bacteriophages of enteric bacteria. J. Virol. Methods 106,
Borrego, J.J., Cornax, R., Preston, D.R., Farrah, S.R., McElhaney, B., Bit-            215–224.
    ton, G., 1991. Development and application on new positively charged           Muniesa, M., Lucena, F., Jofre, J., 1999. Study of the potential relationship
    filters for recovery of bacteriophages from water. Appl. Environ. Mi-              between the morphology of infectious somatic coliphages and their
    crobiol. 57, 1218–1222.                                                            presence in the environment. Lett. Appl. Microbiol. 87, 402–409.
Grabow, W.O.K., 2001. Bacteriophages: update on application as model               Pedroso, D.M.M., Martins, M.T., 1995. Ultra-morphology of coliphages
    for viruses in water. Water SA 27, 251–268.                                        isolated from water. Water Res. 29, 1190–1202.
Havelaar, A.H., Furuse, K., Hogeboom, E.H., 1986. Bacteriophages and               Schulze, E., Lenk, J., 1983. Concentration of coliphages from drinking
    indicators bacteria in human and animal faeces. J. Appl. Bacteriol.                water by Mg(OH)2 flocculation. Naturwissenschaften 7, S: 612.
    60, 255–262.                                                                   Shields, P.A., Farrah, S., 1986. Concentration of viruses in beef extract
Hsu, F.C., Handzel, T.R., Lovelance, G., Stewart, J.R., Sobsey, M.D.,                  by flocculation with ammonium sulphate. Appl. Environ. Microbiol.
    1998. Improved methods to detect low levels of coliphages in wa-                   51, 211–213.
    ter by enrichment presence-absence and membrane filter methods.                Sinton, L.W., Finlay, R.K., Reid, J.A., 1996. A simple membrane
    In: Proceedings of the 1998 Water Quality Technology Conference,                   filtration-elution method for the enumeration of F-RNA, F-DNA and
    American Water Works Association. Denver, CO.                                      somatic coliphages in 100 ml water samples. J. Microbiol. Methods
IAWPRC Study Group on Health Related Water Microbiology, 1991.                         25, 257–269.
    Bacteriophages as model viruses in water quality control. Water Res.           Sobsey, M.D., Schwab, K.J., Handzel, T.R., 1990. A simple membrane
    25, 529–545.                                                                       filter method to concentrate and enumerate male-specific RNA col-
Jofre, J., 2002. Bacteriophages as indicators. In: Bitton, G. (Eds.), Encyclo-         iphages. J. Am. Water Works Assoc. 82, 52–59.
    pedia of Environmental Microbiology. Willey, New York, pp. 354–363.            Tartera, C., Jofre, J., 1987. Bacteriophages active against Bacteroides
Kott, Y., Ben Ari, H., 1968. Bacteriophages as marine pollution indicators.            fragilis in sewage polluted waters. Appl. Environ. Microbiol. 53,
    Rev. Int. Océanogr. Méd. ix, 207–217.                                              1632–1637.
Logan, K.B., Rees, G.E., Primrose, S.B., 1980. Rapid filtration of bacte-          Vilaginés, P., Sarrette, B., Champsaur, H., Hughes, B., Dubrou, S., Joret,
    riophages from large volumes of freshwater: evaluation of positively               J.C., Laveran, H., Lesne, J., Paquin, J.L., Delattre, J.M., Oger, C.,
    charged % microporous filters. J. Virol. Methods 1, 87–97.                         Alame, J., Grateloup, I., Perrollet, H., Serceau, R., Sinegre, F., Vi-
Lucena, F., Muniesa, M., Araujo, R., Jofre, J., 1995. Simple concentration             laginés, R., 1997. Round Robin investigation of glass wool method
    methods for bacteriophages of Bacteroides fragilis in drinking water.              for poliovirus recovery from drinking water and sea water. Water Sci.
    J. Virol. Methods 45, 121–130.                                                     Technol. 35, 445–449.