Detectors - Mass Spectrometry
Detectors - Mass Spectrometry
                                                                                M#zPF#
                                                                                     1 #R
                                                                                         z
Ion Formation
Mass spectrometers are used to analyse ionized            and/or:
sample molecules. There are essentially four methods                            M#zPF#z
                                                                                     2 #N
in which a neutral sample molecule (M) can be con-
verted into an ionic species:                             (where F# 1 represents an even electron fragment ion,
                                                          Rz a neutral radical, F#z
                                                                                  2  an odd electron fragment
  M#e\PM#z#2e\ (removal of an electron)                   ion, often called a radical ion, and N a neutral
                                                          species).
      M#e\PM\z (addition of an electron)
   Both types of initial fragment ions may also further               Electron ionization is the most widely used ioniz-
fragment:                                                          ation technique for GC-MS. However, it has a num-
                                                                   ber of limitations. The most important of these is
                       F#   #
                        1 PF3 #N                                   caused by the excess internal energy of the initially
and/or:                                                            formed molecular ions. For certain classes of com-
                                                                   pounds, they all fragment in the ion source and hence
                      F#z  #
                       2 PF4 #R
                               z
                                                                   a molecular ion is not observed in the recorded mass
                                                                   spectrum. This removes one of the key pieces of
Fragmentation will continue until the excess internal              information from the mass spectrum, i.e. the relative
energy is dissipated. The appearance of EI mass                    molecular mass of the compound under investigation.
spectra is a function of the compound under invest-                In order to overcome this, other ionization techniques
igation, the electron energy used and the ion source               are available to the mass spectroscopist, the most
temperature. For this reason it is usual to record EI              important of these being chemical ionization (CI).
mass spectra at an electron energy of 70 eV which
gives good sensitivity, interpretable fragmentation                Chemical Ionization (CI)
and allows comparison to be made between spectra
                                                                   Positive ion chemical ionization In positive ion CI
recorded on different instruments and with standard
                                                                   an ion source slightly modiRed from that shown in
spectra stored in computerized libraries.
                                                                   Figure 1 (by reduction of the size of the ion exit
   An EI mass spectrum of 2-nitroSuorene, a nitrated
                                                                   aperture) is Rlled with a reagent gas (e.g. methane,
polycyclic aromatic hydrocarbon, is shown in
                                                                   isobutane or ammonia) to a pressure of about
Figure 2A. This mass spectrum illustrates some of the
                                                                   0.1}1.0 mbar. At this pressure ion}molecule reac-
key features of EI spectra. A small molecular ion can
                                                                   tions can occur between ions of the gas (created by EI
be seen at m/z 211 along with fragment ions corre-
                                                                   processes) and neutral gas molecules. Taking as an
sponding to the loss of zOH and NO2 groups. The
                                                                   example some of the processes that occur when meth-
pattern of fragment ions, i.e. their intensity and distri-
                                                                   ane is used as a reagent gas:
bution is characteristic of 2-nitroSuorene and library
search, used where possible in combination with GC
retention time (obtained from a standard sample),                  nCH4#ne\PnCH#z    #     #
                                                                               4 #nCH3 #nCH2 #nCH
                                                                                                 #
                                                                            nCH4#nCH#      #
                                                                                    3 PnC2H5 #nH2
                                                                          nM#nCH#            #
                                                                                5 Pn(M#H) #nCH4
                                                                                   proton transfer
                                                                          nM#nC2H#            #
                                                                                 5 Pn(M#H) #nC2H4
                                                                                    proton transfer
                                                                             nM#nC2H#
                                                                                    5 Pn(M#C2H5)
                                                                                                     #
electrophilic addition
n(M#H)# protonated molecular species with addi-               In a similar manner to the use of the electron-
tional conRrmation of the assignment being given by        capture detector for gas chromatography, the use of
the presence of the (M#C2H5)# adduct ion. Where            electron capture NCI GC-MS can introduce sensitiv-
ammonia is used as the reagent gas electrophilic addi-     ity and speciRcity into an analysis. Whereas approx-
tion is often as important or the dominant process         imately 100 pg of sample are required to record a
and in this case the (M#NH4)# adduct ion may be            mass spectrum in EI mode, NCI spectra have been
used.                                                      recorded from a little as 500 fg (for appropriate elec-
   Figure 2B shows the positive ion chemical ioniz-        tron capturing compounds). This will be further illus-
ation mass spectrum of 2-nitroSuorene obtained us-         trated below.
ing methane as reagent gas. Note the large (M#H)#
peak at m/z 212 and the reduced fragmentation com-
pared to the corresponding EI spectrum. Also visible       The Separation of Ions and
is the adduct ion at m/z 240 corresponding to the          Recording of Mass Spectra
(M#C2H5)# ion formed by the electrophilic addi-
                                                           There are many methods available for the separation
tion process discussed earlier.
                                                           of ions and recording of mass spectra. The ionization
                                                           methods described above have been incorporated into
Negative ion chemical ionization (NCI) Chemical
                                                           all of the current commercial types of mass spectro-
ionization is also a useful way of producing negative-
                                                           meter. In this section only brief descriptions of these
ly charged species for mass spectrometry. There are
                                                           are offered. For a more complete discussion see either
two important mechanisms for ion formation in NCI.
                                                           Chapman (1993) or Johnstone and Rose (1996).
The Rrst, which is analogous to the processes already
                                                              The key parameters to take into account in the
described for positive CI, is proton transfer:
                                                           selection of a particular type of mass spectrometer for
                                                           a GC-MS experiment are the masses of the com-
             M#B\P(M!H)\#BH
                                                           pounds under consideration and the selectivity and
                                                           sensitivity required for the analysis. Where the largest
This type of reaction will occur when the relative
                                                           compounds to be encountered are likely to have
proton afRnity of the reagent gas anion (B\) is high. It
                                                           a relative molecular mass of less than 1000 any of the
is a relatively low energy process and leads to mass
                                                           types of mass spectrometer described below is useful.
spectra containing intense (M!H)\ ions and little
fragmentation.
                                                           The Quadrupole Mass Filter
   However, a more important mechanism of ion
formation in NCI, and one that has been widely             The quadrupole mass Rlter is the most widely em-
utilized in GC-MS, is via an electron capture process.     ployed type of mass analyser in current use. It com-
If a compound containing one or more suitable elec-        prises four metal rods accurately aligned around
tronegative groups is introduced into the ion source in    a central axis. RF and DC voltages on the rods create
the presence of a high pressure (&1 mbar) of a buffer      a complex electrostatic Reld within the area bound by
gas (e.g. methane) the following reaction can occur:       them. Ions entering this region are acted on by the
                                                           electrostatic Reld and their motion through the rods
   M#e\th#CH4P(CH4z M\z)HPM\z#CH4                          can be likened to two superimposed sine waves. Un-
                                                           der these conditions the forces acting on most ions
In the above equation the thermal electrons (e-th) are     cause the amplitude of the oscillations to increase and
produced from the electron ionization of the meth-         accelerate them into the quadrupole rods. However,
ane. The neutral methane molecules also act to col-        some ions are not accelerated into the rods and under-
lisionally stabilize the excited radical anion formed      go trajectories that traverse the full length of the rods.
by associative resonance electron capture. This leads      The parameters that govern the equations of motion
to the observation of a radical anion (M\z) in mass        of ions in a quadrupole mass Rlter are the mass to
spectra recorded using this ionization method.             charge ratio of the ions, the spacing between the rods,
   Electron capture is a very low energy process and       the frequency of the RF voltage and the magnitude of
the recorded mass spectra contain little or no frag-       the RF and DC voltages. Hence the RF and DC
mentation. The NCI mass spectrum of 2-nitro-               voltages may be selected such that ions of only one
Suorene is shown in Figure 2C. This compound con-          m/z value have ‘stable’ trajectories. By varying the RF
tains an electronegative nitro group, and is ionized       and DC voltages but keeping the ratio between them
via the electron capture process. An intense M\z ion       the same a range of m/z values can be made to
can be seen at m/z 211 with no evidence of frag-           undergo stable trajectories, be brought to focus on the
mentation.                                                 detector and a mass spectrum recorded.
                                         II / CHROMATOGRAPHY: GAS / Detectors: Mass Spectrometry                   451
The Ion Trap                                                plications including dioxin analysis. For further de-
                                                            tails the interested reader is referred to Bruner (1993).
The ion trap operates in a similar manner to a quad-
rupole mass Rlter. It comprises a doughnut-shaped
ring electrode to which the RF voltage is applied           Interfacing Mass Spectrometers with
and two end caps either earthed or with supple-             Gas Chromatographs
mentary AC or DC voltages. Ions formed either in
the trap, or externally to the trap and transported into    There are several methods available for interfacing
it, are initially stored within the trap. Mass separation   gas chromatographs with mass spectrometers. These
is then achieved by increasing the RF voltage such          include the use of jet separators for packed columns
that ions are ejected from the trap in ascending m/z        and a variety of ways of interfacing capillary col-
order.                                                      umns. For packed columns the jet separator, a form
                                                            of momentum separator, is required to remove the
The Double Focusing Magnetic Sector                         majority of the carrier gas. A ‘solvent dump valve’ is
Mass Spectrometer                                           also incorporated into these devices in order that the
                                                            injection solvent can be vented to waste rather than it
The double focusing magnetic sector mass spectro-           passing into the mass spectrometer.
meter differs from those discussed so far in that the          Although a number of interfaces for packed col-
mass analyser comprises two distinct components, an         umn GC-MS have been described in the past, capil-
electromagnet and an electrostatic analyser. The            lary columns are currently almost exclusively used for
magnet acts as a momentum analyser and affects              GC-MS. The most widely used interface, in this case,
mass separation, while the addition of an electrostatic     is the direct interface, where the column is passed
analyser corrects for some variations in the kinetic        through a simple heated transfer line directly into an
energy of ions of the same m/z value and allows them        EI or CI ion source. The low (1 mL min\1) carrier gas
to be brought to focus on the detector at the same          Sow commonly used with capillary columns can
time. Hence the use of a double focusing arrangement        readily be accommodated by the MS pumping system
as a mass analyser allows very high resolution to be        in order to maintain a good vacuum. Figure 3 shows
achieved. In mass spectrometry resolution is deRned         a complete instrument based around the use of a cap-
as the ability of the mass spectrometer to separate         illary column, a simple direct interface and a quadru-
ions of very similar m/z value.                             pole mass spectrometer. For a more complete dis-
   Resolution is important in mass spectrometry since       cussion of the full range of GC-MS interfaces see
it may be used to introduce speciRcity into an experi-      either Chapman (1993) or Johnstone and Rose
ment. An important application of high resolution           (1996).
arises in the determination of polychlorinated diben-
zodioxins (PCDDs) and polychlorinated dibenzo-
furans (PCDFs) by GC-MS. These compounds are                GC-MS Experiments
found ubiquitously in the environment and their de-
                                                            Full or Normal Scan
termination is important owing to concern about
their toxicity, mutagenicity and carcinogenicity. The       The standard GC-MS mode of operation is the full or
only method that has been found to offer the appro-         normal scan mode. On injection of the sample into
priate degree of sensitivity and speciRcity for this        the GC, the mass spectrometer is set to repetitively
analysis is GC followed by high resolution MS detec-        scan over a preset mass range. Typically this would
tion. High resolution is required since matrices which      involve the mass spectrometer recording a mass spec-
accumulate PCDDs and PCDFs are also likely to               trum over the scan range 35}500 Da once a second.
accumulate other polychlorinated aromatic hydro-
carbons, e.g. polychlorinated biphenyls. These com-
pounds, which may co-elute with the PCDDs and
PCDFs of interest, contain fragment ions in their EI
mass spectra which have the same integer m/z value
as the molecular ions of PCDDs and PCDFs. How-
ever, by monitoring the accurate mass value of the
PCDD and PCDF molecular ions (i.e. the exact mass
value of their elemental composition), at an adequate
resolution to separate them from likely interfering
ions, speciRcity is introduced. GC-MS is used exten-        Figure 3 A quadrupole based GC-MS instrument employing
sively in environmental analysis for a range of ap-         a direct interface for connection between the GC and the MS.
452   II / CHROMATOGRAPHY: GAS / Detectors: Mass Spectrometry
The requirement for relatively fast acquisition rates is    rated polycyclic aromatic hydrocarbons (nitro-PAH)
due to the fact that open tubular GC columns typi-          in vegetation extracts. Nitro-PAH are absorbed on to
cally produce peaks of only about 10}15 s wide.             vegetation from anthropogenic emissions, however
Hence, in order to acquire a representative number of       their determination is made complex by the large
mass spectra from each peak, fast scan rates are            amount of other compounds extracted from the veg-
required. A second consequence of these fast acquisi-       etation by the sample preparation procedure.
tion rates is the requirement for a data system on all      Figures 4A and B show a comparison between the
GC-MS instruments. Each mass spectrum can then be           chromatogram obtained from an extract of bark from
stored in the data system for subsequent examina-           a maple tree in an urban region using an ECD and the
tion/data processing.                                       individual mass chromatograms obtained from the
   Full scan data are used by the data system to            same extract using GC-MS in NCI-SIM mode. The
generate a total ion chromatogram (TIC). This is
achieved by summing the intensity of the ions in each
mass spectrum to create a value for the total ion
intensity, as a number of ions or total number of
analogue to digital converter bits. This number is
then plotted against time/scan number to create
a chromatogram. One of the great strengths of GC-
MS using EI ionization is that the TIC generated by
this method is then directly comparable with a
chromatogram produced from the same sample using
Same ionization detection.
Figure 6 A comparison of the GC-HRMS-SIM fingerprints of methyldibenzothiophenes and C2-dibenzothiophenes in three crude oils
from two North Sea fields. (Reproduced from Tibbets and Large (1988) by kind permission of John Wiley and Sons.)
directly from the fragmentation of m/z 211 and con-             increase the speciRcity of an analysis. After Rrst re-
tains structural information. It can be seen that this          cording product ion mass spectra of the analyte(s) of
method is also useful for clearing up ambiguities in            interest, one or more precursor/product ion relation-
the interpretation of EI spectra, since it allows precur-       ships are chosen. The criteria for this are that the
sor/product ion relationships to be clearly deRned.             product ions selected are intense and characteristic of
   A second application of tandem mass spectrometry             the speciRed analyte. Then in order to carry out the
often used in conjunction with GC-MS utilizes a tech-           MRM experiment, the Rrst quadrupole mass analyser
nique called multiple reaction monitoring (MRM).                is set up in SIM mode, to switch between the precur-
This technique, like high resolution SIM, is used to            sor ions of interest. The collision cell is operated in
                                                 II / CHROMATOGRAPHY: GAS / Detectors: Mass Spectrometry                   455