Biology
Biology
1. Magnification:
   - 1-pico = 10^-12
   - 1-nano = 10^-9
   - 1-micro = 10^-6
   - 1-milli = 10^-3
   - 1-centi = 10^-2
   - 1-deci = 10^-1
   - 1-kilo = 10^3
   - 1-mega = 10^6
   - 1-giga = 10^9
   - 1-tera = 10^12
2. Organelles:
   - Functions for animal cells –
   1. Cell membrane – Controls passage of substances in/out of cell.
   2. Cytoplasm – Where most chemical reactions occur.
   3. Ribosomes – Site of protein synthesis.
   4. Mitochondria – Releases energy in aerobic respiration.
   5. Nucleus – Controls activities of cell.
3. Cells:
   - Bacterial cell structure – Contains cell wall, cell membrane, cytoplasm, genes not in
       distinct nucleus, plasmids
   - Plasmids – Extra circular genes
   -    Specialized cells – Adapted to perform specific function.
4. Organization:
   - Large multicellular organisms – During development, cells differentiate to perform
      different/specific functions to develop systems to exchange necessary materials
      between organism/surroundings.
   - Small single-celled organism – High surface area to volume ratio, so use cell
      membrane to exchange necessary materials.
   - Increasing size/complexity of organism – Increases difficulty of exchanging necessary
      materials.
   -    Stomach –
   1.   Epithelial – Cover outside/inside of stomach.
   2.   Muscular – Contracts to allow contents to move through digestive system.
   3.   Glandular – Produce digestive juices.
   - Digestive system –
   1. Salivary glands – Has glandular tissue that produce amylase to catalyze breakdown of
      starch into simple sugars.
   2. Stomach – Has muscular tissue that contract to bring about movement to mix food
      with enzymes for digestion to occur/move contents through digestive system. Has
      glandular tissue that produce hydrochloric acid for enzymes in stomach to work most
      effectively in optimum pH.
   3. Pancreas – Has glandular tissue that produces enzymes that catalyze breakdown of
      large/insoluble molecules into smaller/soluble molecules.
   4. Liver – Has glandular tissue that produce bile to allow enzymes in small intestine to
      work most effectively in optimum pH.
   5. Small intestine – Has glandular tissue that produce enzymes to catalyze breakdown
      of large/insoluble molecules into smaller/soluble molecules for digestion to occur.
      Has epithelial tissue that cover inside of wall to absorb soluble food products into
      bloodstream.
   6. Large intestine – Has epithelial tissue inside of wall to absorb water from indigestible
      food products to produce feces.
   -    Leaf –
   1.   Epidermal tissue – Covers plant.
   2.   Palisade mesophyll – Performs photosynthesis.
   3.   Spongy mesophyll – Contains air spaces to facilitate diffusion of gases.
   4.   Stoma – Site of gas exchange.
   5.   Guard cell – Protects stoma.
5. Transport:
   - Diffusion – Spreading of particles of substance in solution/gas resulting in net
       movement from area of higher to lower concentration.
   - Steeper concentration gradient – Increases difference on concentration, so increases
       rate of diffusion.
   - Higher temperature – More kinetic energy so increases rate of diffusion.
        Animal cells –
     1. Hypertonic solution – Shrinks as water diffuses out by osmosis.
     2. Hypotonic solution – Swells/bursts as water diffuses in by osmosis.
     3. Isotonic solution – No change as no net movement.
     - Plant cell –
     1. Hypertonic solution – Cell becomes plasmolyzed/permanent vacuole gets smaller,
        decreasing turgor pressure as water moves out by osmosis.
     2. Hypotonic solution – Cell becomes turgid/permanent vacuole gets larger, increasing
        turgor pressure as water moves in by osmosis vacuole.
     3. Isotonic solution – No change as no net movement.
     -    Potato weighs more than expected, leaving water on mass balance – Not blotted.
     -    Potato weighs less than expected – Not submerged properly.
     -    Few anomalous results, no pattern – Not measured properly.
     -    The point where the line crosses the x-axis is the original concentration inside the
          potato as there is no change in mass.
UNIT 2 – Bioenergetics
1.       Photosynthesis:
   - Photosynthesis –
   1. Chloroplasts of plant cell/algae contain chlorophyl to absorb light.
   2. Light converts carbon dioxide from air/water from soil to glucose/oxygen as by-
      product.
   - Word equation – Carbon dioxide + water -> (under light) glucose + oxygen
   - Chemical equation – 6CO2 + 6H20 -> (under light) C6H12O6 + 6O2
   -    Limiting factors – Low temperature, low light intensity, low carbon dioxide.
   -    Line is stagnant – Once the line plateaus, factor is no longer limiting rate of
        photosynthesis, so is likely something else.
   -    Glucose – Used as source of chemical energy, converted into larger molecules for
        storage, later use.
   -    Source of chemical energy example – Used in aerobic respiration.
   -    Storage examples – Converted into insoluble starch for storage/later use/used to
        produce fat/oil for storage/later use.
   -    Use examples – Used to produce cellulose/produce proteins
- Plant cells – Use nitrate ions absorbed from soil to produce proteins.
2. Photosynthesis practical:
      1. Clamp boiling tube to clamp stand 10cm away from LED lamp
      2. Fill boiling tube with sodium hydrogen carbonate solution.
      3. Gently push 10cm aquatic plant with cut end facing upwards into boiling tube
         with glass rod.
      4. Leave boiling tube for 5 minutes.
      5. Start stop watch to count number of bubbles produced in 1 minute.
      6. Repeat steps thrice, each time increasing distance between boiling tube/LED
         lamp by 10cm.
      7. Repeat experiment thrice to calculate mean number of bubbles produced in 1
         minute for each distance.
      8. Plot distance on x-axis/mean number of bubbles produced in 1 minute.
   - Control variable –
   1. Concentration of hydrogen carbonate solution
   2. Length of plant
3. Circulation:
   -    Circulation system – Contains heart, blood vessels, blood to transport substances
        from where they enter body to cells/from cells to where they exit body.
   -    Double circulatory system – 1 circulation system is for lungs/1 circulation system is
        for rest of organs of body.
   -    Heart – Organ where wall is made of muscle tissue that pumps blood to rest of body
        in double circulatory system.
   -    Valves – Prevent backflow
   -    Coronary artery – Supplies oxygenated blood to heart.
   -    Septum – Thick wall to prevent oxygenated/deoxygenated blood from mixing.
   -    Thicker wall – Left ventricle has to contract/force oxygenated blood to rest of body at
        higher pressure while right ventricle only needs to contract/force deoxygenated
        blood to lungs. So thicker wall to withstand higher pressure.
   -    Arteries – Blood vessels that carry oxygenated blood away from heart.
   1.   Thick walls
   2.   Narrow lumen
   3.   No valves
   -    High blood pressure – Thick walls with muscular/elastic fibers that stretch to
        withstand high blood pressure.
   -  Capillaries – Blood vessels that allow substances needed by cells in tissue move out
      of blood into cells through walls of capillaries, substances produced by cells in tissue
      move out of cell into blood through walls of capillaries, connects veins/arteries.
   1. One-cell thick wall
   2. Narrow lumen
   3. No valves
4. Blood:
   - Blood – Tissue that suspends plasma, red blood cells, white blood cells, platelets.
   -    Plasma – Straw-colored liquid that transports substances.
   1.   soluble digestion products from small intestines to organs
   2.   CO2 from organs to lungs
   3.   Urea from liver to kidneys.
   -    Red blood cells – Bio-concave disc-shaped cells with no nucleus that transport
        oxygen from lungs where hemoglobin binds with oxygen to form oxyhemoglobin to
        organs where oxyhemoglobin splits into oxygen/hemoglobin.
   -    Platelets – Small fragments of cells with no nucleus that help blood clot to site of
        wound.
3. Digestion:
   - Enzymes – Large proteins that act as biological catalysts by increasing rate of reaction
      without being used up to speed up breakdown of large insoluble molecules into
      smaller soluble molecules so that they’re absorbed into bloodstream through wall of
      small intestine.
   - Enzymes work outside body cells –
   - Specialized cells in glands/lining of gut produce enzymes
   - Pass out of cells into gut
4. Breathing:
   - Respiratory system – Takes air in body so oxygen can diffuse from air into
      bloodstream/takes air out of body so carbon dioxide can diffuse from bloodstream
      into air.
   - Structure – Lungs are in thorax protected by ribcage, separated from abdomen by
      diaphragm.
   - Breathing – The physical process of inhalation and exhalation of atmospheric air.
   - Alveoli - The site of gas exchange between carbon dioxide in bloodstream/oxygen in
      lungs.
   -    Inhalation –
   1.   Intercostal muscles contract, pulling ribcage upwards.
   2.   At same time diaphragm muscles contract, flattening it.
   3.   Both cause an increase in volume of thorax.
   4. Decreasing pressure below that of air around body, results in atmospheric air
      entering lungs.
   -    Exhalation –
   1.   Intercostal muscles relax, allowing ribcage downwards.
   2.   At same time the diaphragm muscles relax, resuming dome shape of it.
   3.   Both cause a decrease in the volume of thorax
   4.   Increases pressure to above that of air around body, results in atmospheric air exiting
        lungs.
5. Respiration:
   - High temperature – When more than 45 degrees, temperature changes active site of
      enzyme, so enzyme denatures, so aerobic respiration can’t occur.
   - For plants/microorganisms –
   1. Word equation – Glucose -> Ethanol + Carbon Dioxide
   2. Chemical equation – C6H1206 -> 2C2H5OH + 2CO2
   -  During exercise –
   1. Body has increased demand for energy.
   2. Breathing rate/depth increases to increase supply of oxygen to muscles.
   3. Heart rate increases to increase blood flow to muscles, increasing rate of carbon
      dioxide removal from muscles.
   4. Glycogen stored in muscles is converted into glucose to increase supply of glucose to
      muscles.
   -   During long exercise – Buildup of lactic acid causes muscles to become fatigued, so
       stop contracting efficiently, so blood flows through muscles to remove it.
6. Respiration practical:
   1. Grab hand exerciser with dominant/rest it on table.
   2. Start stopwatch timer
   3. Squeeze hand exerciser fully 1 repetition every 3 seconds until
   4. Once it’s too painful to continue, stop hand/stopwatch timer.
   5. Rest for 5 minutes.
   6. Repeat steps thrice, each time increasing repetitions every 3 seconds by 1.
   7. Repeat experiment thrice to calculate mean time taken until too painful to continue.
   8. Plot number of repetitions every 3 seconds against mean time taken until too painful
      to continue.
   -   Safety precautions – Handle hand exerciser carefully to avoid breaking it. Ensure
       muscles aren’t overused to prevent muscle damage.
UNIT 3 – Ecology
   1. Interdependence:
   - Organisms – Require supply of materials from environment and other organisms to
      survive/reproduce.
   2. Competition:
   - Plants – Compete with each other for light, space, water from soil, nutrients from
      soil.
   - Animals – Compete each other for food, mates, territory.
   3. Adaptation:
   - Organisms – Have adaptations that allow them to survive in conditions they normally
      live in.
   - Extremophiles – Organisms that live in extreme environment, such as containing high
      salt level, high temperature, high pressure.
1. Nervous system:
   - Nervous system – Allows to coordinate behavior/react to environment.
   - CNS (Central Nervous System) – Made of brain/spinal cord.
   -  Reflex – Automatic/rapid action that involve sensory, relay, motor neurons/ not
      conscious part of brain.
   - Reflex example – Pain-withdrawal
   - Important for survival – Helps prevent damage to body.
   1. Stimulus is detected by receptor.
   2.   Sends impulse along sensory neuron to spinal cord in CNS.
   3.   Release of chemical along synapse between sensory neuron/relay neuron.
   4.   Sends impulse along relay neuron.
   5.   Releases chemical along synapse between relay neuron/motor neuron.
   6.   Sends impulse along motor neuron to effector.
   7.   Muscle contracts/gland secretes chemical substance.
2. Homeostasis:
   - Homeostasis – Automatic control systems in body keep conditions in body relatively
     constant.
   - Receptors – Cells detect stimuli.
   - Eyes – Has receptors that’s sensitive to light.
   - Ears – Has receptors that’s sensitive to sound/changes in position to keep balance.
   - Tongue – Has receptors that’s sensitive to chemicals to taste.
   - Inside nose – Has receptors that’s sensitive to chemicals to smell.
   - Skin – Has receptors that’s sensitive to touch, pressure, pain, temperature change.
   - Brain – Has receptors that’s sensitive to temperature of blood/water concentration of
     blood.
   - Pancreas – Has receptors that’s sensitive to glucose concentration in blood.
   - Coordination center – Receive/process information from receptors, such as
     brain/spinal cord/pancreas.
   - Effector – Bring about response.
   - Temperature in body –
   1. Skin has receptors sensitive to temperature change that send impulses to
      thermoregulatory center which give information about skin temperature.
   2. Thermoregulatory center in brain has receptors that’s sensitive to temperature of
      blood flowing through brain to monitor/control body temperature.
   3. When core body temperature is too high, blood vessels that supply skin capillaries
      dilate to increase blood flow through capillaries, so increases energy transferred from
      skin to environment/sweat glands increase release of sweat to cool body by
      evaporating.
   4. When core body temperature is too low, blood vessels that supply skin capillaries
      constrict to decrease blood flow through capillaries, so decreases energy transferred
    from skin to environment. Muscles contract to shiver which requires respiration,
    increasing transfer of energy to warm body.
-   Hot temperature – Increases water loss, so more fluid intake needed via food or
    water needed to balance water loss.
-   Type 1 diabetes – Person’s blood glucose level is too high because pancreas doesn’t
    produce enough insulin.
-   Treatment – Controlled by careful diet, exercise, insulin injection
-   Type 2 diabetes – Person’s blood glucose level is too high because obesity causes
    body to not respond to its own insulin.
-   Treatment – Controlled by careful diet, exercise, drugs that help cells respond to
    insulin.
5. Behavior:
- Behavior – Action made in response to stimulus that modifies relationship between
   organism/environment.
-   Innate – Organism acts are not learnt but come from nerve pathways formed in
    embryo development stage, such as spider building web.
-   Imprinting – Animal emotionally attaches itself to large organism/parent to enable
    recognition of other animals of same species in very early stage of life.
-   Habituation – Animal eventually stops responding to stimulus when stimulus
    repeats/nothing occurs.
-   Classical conditioning – Animal learns to associate existing unconditioned reflex with
    new stimulus.
-   Operant conditioning – Animal repeats learns with trial/error by repeating behavior if
    something good happens/stop behavior if something bad happens.
-   Sniffer dogs – Humans condition captive dogs in training to locate drugs/explosives.
-   Police horses – Humans condition captive horses in training to remain calm when
    managing crowds.
6. Infection:
- Pathogens – Microorganisms that can cause infectious diseases.
- Bacteria – Microorganism that rapidly reproduce inside body which produces toxins
   to make us feel ill
- Viruses – Microorganism that rapidly reproduce inside body which live inside cells to
   cause damage to body.
-    Antibiotics – Specific medicine that kills specific infective bacteria inside body to help
     cure bacterial disease.
-    Example – Penicillin
-    Benefit – Significantly decreases amount of deaths from infectious bacterial disease.
   -    Disadvantage – Can’t treat viral pathogens.
- Drugs that kill viral pathogens – Difficult to develop without damaging body tissue.
   7. Infection practical:
   1. Using disinfectant, spray worktable then wipe it with paper towels.
   2. Using wax pencil on underneath of nutrient agar plate, divide plate into 3 equal
       sections, labelling each with number with dot in middle of each section, then write
       your initials, date, name of bacteria on edge of plate.
   3. Using antibacterial handwash, wash your hands.
   4. Soak filter paper into or spread on filter paper discs different antiseptics.
   5. Carefully lift lid of agar plate at angle, then using forceps, carefully put each paper
       disc onto each dot.
   6. Using 2 small pieces of tape, secure lid of agar plate in place.
   7. Record antiseptic used in each section of agar plate onto table.
   8. Incubate plate at 25 degrees Celsius for 48 hours.
   9. Using ruler on center of paper disc, measure diameter of clear zone around each
       paper disk then record it onto table.
   10. Repeat measuring again 90 degrees to first measure then calculate mean diameter
       then record onto table.
UNIT 5 – Inheritance
1. Reproduction:
   -    Sexual reproduction – Fusion of male and female gametes of 2 parents causes
        mixture of genetic information so there’s genetic variation in offspring.
   -    Asexual reproduction – No fusion of male/female gametes of 1 parent causes no
        mixture of genetic information so no genetic variation in clones.
   -    Clones – Genetically identical offspring.
2. Cell division:
   - Body cell – Divides by mitosis to produce additional cells for growth or produce
       replacement cells for repair or replacement.
   1. Copies of genetic material are made.
   2. Cell divides once to form 2 genetically identical body cells each with 46
       chromosomes.
   -    Mature animals – Cell division is restricted to producing replacement cells for repair
        or replacement.
   -    Gametes – During fertilization, they fuse to form body cell with 46 chromosomes to
        repeatedly divide by mitosis to produce additional cells for growth.
   3.   Cell differentiation:
   -    Cells – Differentiate to form different types of cells.
   -    Animals – Many animal cells differentiate only at early stage of life time.
   -    Plants – Many plant cells retain ability to differentiate throughout lifetime.
   -    Stem cells – Cells from human embryo or adult bone marrow that differentiate to
        form different types of human cells.
3. Genetic structure:
   - Female – Last pair of chromosomes are same so XX.
   - Male – Last pair of chromosomes are different so XY.
4. Genetic disorders:
   - Diseases – Can be inherited.
   - Extra chromosome – Causes Down’s Syndrome.
5. Genetic manipulation:
   - Tissue culture – Uses small plant cell groups.
   - Advantage – Plants reproduce asexually from 1 parent, so mixture of genetic
      information, so no variation in clones that are genetically identical offspring, so
      desirable characteristics are passed on to new plants.
   - Embryo transplant –
   1. Unspecialized cells are split from developing animal embryo.
   2. Unspecialized cells as genetically identical embryos are transplanted into host
      mothers.
   -    Therapeutic cloning – Produces embryo with stem cells of same genes as patient to
        medically treat patient
   -    Use – Treats paralysis
   -    No rejection – Produces embryo which has stem cells with same genes as patient.
   -    Ethical concern – Potential harm to embryo which has life.
   -    Genetic engineering –
   1.   Enzymes isolate required gene by cutting gene off chromosome of cell.
   2.   Gene is inserted into vector that’s usually virus or bacterial plasmid.
   3.   Vector with genes is inserted into required cells.
   -    Done at early stage of development – Develops with desired characteristics.
1. Variation:
   - Variation causes – Caused by genes, such as genes inherited from reproduction or
       genes mutated, environment, such as diet, or both.
   - Similar characteristics causes – Parents have genes that contain genetic information
       passed on by gametes to offspring.
2. Evolution:
   - Lamarck’s Theory – Changes that occur in organism’s life is inherited.
   - Natural selection – Theory of evolution that life began millions of years ago.
   1. Organisms of species show wide range of genetic variation from difference in genes.
   2. Organisms with characteristics most suited to environment are more likely to
      survive/reproduce successfully
   3. Genes that allowed organisms to survive/reproduce successfully are passed on by
      gametes to next generation.
3. Speciation:
   1. Isolation – Two populations of species become separated.
   2. Genetic variation – Each population had wide range of alleles that control their
      characteristics.
   3. Different environment – Each population has different environmental conditions.
   4. Natural selection – Alleles that control for characteristics which help organism
      survive are selected. (refer to 3 marker on natural selction)
   5. Speciation – Two populations become so different that successful interbreeding
      leading to fertile offspring is impossible.
DNA has a specific order of bases a gene is a section of DNA that codes for a protein each
amino acid is coded for by three bases each antibody has a specific order of amino acids