The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
Single Cell RNA-seq UMI Filtering Facilitator
GPSeq sequencing data analysis pipeline
A framework implementing a new proposed method for UMI deduplication and reads correction. The method works at nucleotide level, taking into account the frequency and the mean quality of each base.
R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.
Documents and scripts for analysis of oligonucleotide synthesis errors.
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Single Cell RNA-seq UMI Filtering Facilitator
Single Cell RNA-seq UMI Filtering Facilitator
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