This script allows us to generate ORF for a given Protein Sequence.

Search for new PDB structures corresponding to a search term and deposited after a certain date.

This script aims at reading a given PDB file and generation dihedral angles from it.

Python script to correct misformated x, y, and z coordinates output by Q Chem simulations.

Programming project (Python) - Implementation of the DSSP method (Secondary Structure Assignment)

Scripts to aid protein design. Mostly parsing PDBs, fasta files, and score files.

Python program that can identify the residues interacting between chains of a complex protein.

3D vizualisation of pdb files with python

Benchmarking common tasks on proteins in various languages and packages

A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

基于modeller官网脚本进行开发的序列比对脚本

Small library for conversion of pdb files into numpy grids

This Python script for Ghidra will export a table of function names and corresponding ordinals of a DLL, when other tools fail to do so

collect statistics from the entire PDB library

PDB file parser and prepare tools.

Python code to automatically interact with PDBePISA web server

A script able to extract ligands from pdb structure(s) and remove them from the original structure. The ligands are identified according to the *valid* ligands found in the binding MOAD database. The ligand can be extracted as a pdb or as a xyz (coordinate) file. Other options such as converting the queried pdb to pqr are available .

Bioinformatics pipeline for parsing PED data

Convert in batch CIF files to PDB