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International Journal of High Performance Computing Applications, Volume 32
Volume 32, Number 1, January 2018
Introduction
- Jack J. Dongarra, Bernard Tourancheau:
Guest editors' note. 3
- Ewing L. Lusk, Ralph Butler, Steven C. Pieper:
Evolution of a minimal parallel programming model. 4-13 - Yiannis Georgiou, Emmanuel Jeannot, Guillaume Mercier
, Adèle Villiermet:
Topology-aware job mapping. 14-27 - Brice Videau
BOAST: A metaprogramming framework to produce portable and efficient computing kernels for HPC applications. 28-44 - Javier Conejero
Task-based programming in COMPSs to converge from HPC to big data. 45-60 - Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox:
Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink. 61-73 - Charalampos Chalios, Giorgis Georgakoudis
DARE. 74-88 - Anne Benoit
Resilient co-scheduling of malleable applications. 89-103 - Moustafa AbdelBaky, Javier Diaz Montes, Manish Parashar:
Software-defined environments for science and engineering. 104-122 - Guillaume Aupy, Anne Benoit
Co-scheduling Amdahl applications on cache-partitioned systems. 123-138 - George Bosilca, Aurélien Bouteiller
A failure detector for HPC platforms. 139-158 - Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D. Carothers, Kerstin Kleese van Dam
The future of scientific workflows. 159-175 - Anne Benoit
Reducing the energy consumption of large-scale computing systems through combined shutdown policies with multiple constraints. 176-188 - David W. Walker:
Morton ordering of 2D arrays for efficient access to hierarchical memory. 189-203
Volume 32, Number 2, March 2018
Research Papers
- Fande Kong, Xiao-Chuan Cai:
Scalability study of an implicit solver for coupled fluid-structure interaction problems on unstructured meshes in 3D. 207-219 - Hartwig Anzt
Optimization and performance evaluation of the IDR iterative Krylov solver on GPUs. 220-230 - Michael O. Lam
Fine-grained floating-point precision analysis. 231-245 - Lidia Kuan, Frederico Pratas, Leonel Sousa
MrBayes sMC3. 246-265 - Martin Kronbichler
A fast massively parallel two-phase flow solver for microfluidic chip simulation. 266-287 - Alan Gray, Kevin Stratford:
A lightweight approach to performance portability with targetDP. 288-301 - Carmen Cotelo, María Aránzazu Amo Baladrón, Roland Aznar
On the successful coexistence of oceanographic operational services with other computational workloads. 302-313
Volume 32, Number 3, May 2018
Special Issue Papers
- Miguel A. Vega-Rodríguez
Parallelism in computational biology. 317-320 - Nathan T. Weeks
High-performance epistasis detection in quantitative trait GWAS. 321-336 - Enzo Rucci
OSWALD. 337-350 - Ferdinando Auricchio, Marco Ferretti, Adrien Lefieux, Mirto Musci, Alessandro Reali, Santi Trimarchi, Alessandro Veneziani:
Parallelizing a finite element solver in computational hemodynamics. 351-362 - Suejb Memeti
A machine learning approach for accelerating DNA sequence analysis. 363-379 - Francesco Asnicar, Luca Masera
NES2RA. 380-392 - Héctor Martínez
A framework for genomic sequencing on clusters of multicore and manycore processors. 393-406 - Sebastian Daberdaku
Computing voxelised representations of macromolecular surfaces. 407-432
Volume 32, Number 4, 2018
- Mark Asch
Big data and extreme-scale computing. 435-479
- Roman Wyrzykowski
Guest editor's note. 480-481
- Adrian Klusek, Pawel Topa
An implementation of the Social Distances Model using multi-GPU systems. 482-495 - Krzysztof Jurczuk
GPU-based computational modeling of magnetic resonance imaging of vascular structures. 496-511 - Mindaugas Radziunas
Modeling and simulations of broad-area edge-emitting semiconductor devices. 512-522 - Lukasz Szustak
Porting and optimization of solidification application for CPU-MIC hybrid platforms. 523-539 - Heike Jagode
Accelerating NWChem Coupled Cluster through dataflow-based execution. 540-551
- Tom Scogland, David Beckingsale:
Introduction. 553-554
- Tom Deakin
An improved parallelism scheme for deterministic discrete ordinates transport. 555-569 - Robert F. Bird, Patrick Gillies, Michael R. Bareford, Andy Herdman, Stephen A. Jarvis
Performance Optimisation of Inertial Confinement Fusion Codes using Mini-applications. 570-581 - O. E. Bronson Messer
MiniApps derived from production HPC applications using multiple programing models. 582-593
Volume 32, Number 5, 2018
- Wesley Bland, Mattan Erez:
Special Issue on FTS. 597 - David E. Bernholdt
Programmer-guided reliability for extreme-scale applications. 598-612 - Faisal Shahzad, Moritz Kreutzer, Thomas Zeiser, Rui Machado, Andreas Pieper, Georg Hager
Building and utilizing fault tolerance support tools for the GASPI applications. 613-626 - Simon McIntosh-Smith
Application-based fault tolerance techniques for sparse matrix solvers. 627-640 - Omer Subasi, Tatiana V. Martsinkevich, Ferad Zyulkyarov
Unified fault-tolerance framework for hybrid task-parallel message-passing applications. 641-657 - Francesco Rizzi, Karla Morris, Khachik Sargsyan, Paul Mycek, Cosmin Safta
Partial differential equations preconditioner resilient to soft and hard faults. 658-673
- José Ignacio Hidalgo, Francisco Fernández de Vega:
Special issue on "Evolutionary Algorithms on Parallel Architectures and Distributed Infrastructures". 674-675 - Rafael Nogueras
Analyzing self-★ island-based memetic algorithms in heterogeneous unstable environments. 676-692 - Diego Teijeiro
Towards cloud-based parallel metaheuristics. 693-705 - Francisco Chávez de la O
Deploying massive runs of evolutionary algorithms with ECJ and Hadoop: Reducing interest points required for face recognition. 706-720 - Luis Acedo, Clara Burgos
Calibrating a large network model describing the transmission dynamics of the human papillomavirus using a particle swarm optimization algorithm in a distributed computing environment. 721-728
- Amogh Katti
Epidemic failure detection and consensus for extreme parallelism. 729-743 - Jeremy Iverson, George Karypis
A virtual memory manager optimized for node-level cooperative multi-tasking in memory constrained systems. 744-759 - Tarun Prabhu
DAME: Runtime-compilation for data movement. 760-774
Volume 32, Number 6, 2018
- Pavan Balaji, Kai-Cheung Leung:
Introduction. - David del Rio Astorga, Manuel F. Dolz
Finding parallel patterns through static analysis in C++ applications. - Baldomero Imbernón
METADOCK: A parallel metaheuristic schema for virtual screening methods.
- Javier García-Blas
High-level programming for heterogeneous and hierarchical parallel systems. - Marco Danelutto
State access patterns in stream parallel computations. - Issam Said, Pierre Fortin, Jean Luc Lamotte
Leveraging the accelerated processing units for seismic imaging: A performance and power efficiency comparison against CPUs and GPUs. - Ana Moreton-Fernandez, Hector Ortega-Arranz, Arturo González-Escribano:
Controllers: An abstraction to ease the use of hardware accelerators. - David del Rio Astorga, Manuel F. Dolz
An adaptive offline implementation selector for heterogeneous parallel platforms.
- Italo Epicoco, Silvia Mocavero
Hybridisation strategies and data structures for the NEMO ocean model. - Esthela Gallardo, Jérôme Vienne, Leonardo Fialho, Patricia J. Teller, James C. Browne:
Employing MPI_T in MPI Advisor to optimize application performance. - Mirco Altenbernd, Dominik Göddeke
Soft fault detection and correction for multigrid. - Martin Schreiber, Pedro S. Peixoto
Beyond spatial scalability limitations with a massively parallel method for linear oscillatory problems.
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