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Nucleic Acids Research, Volume 27
Volume 27, Number 1, January 1999
- Christian Burks:
Molecular Biology Database List. 1-9 - Claude Discala, Marion Ninnin, Frédéric Achard, Emmanuel Barillot, Guy Vaysseix:
DBcat: a catalog of biological databases. 10-11 - Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette
, Barbara A. Rapp, David L. Wheeler:
GenBank. 12-17 - Guenter Stoesser, Mary Ann Tuli, Rodrigo Lopez
The EMBL Nucleotide Sequence Database. 18-24 - Hideaki Sugawara, Satoru Miyazaki, Takashi Gojobori, Yoshio Tateno:
DNA Data Bank of Japan dealing with large-scale data submission. 25-28 - Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono
KEGG: Kyoto Encyclopedia of Genes and Genomes. 29-34 - M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, Wen Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel
The Genome Sequence DataBase: towards an integrated functional genomics resource. 35-38 - Winona C. Barker, John S. Garavelli
The PIR-International Protein Sequence Database. 39-43 - Hans-Werner Mewes
MIPS: a database for genomes and protein sequences. 44-48 - Amos Bairoch
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. 49-54 - Peter D. Karp
Eco Cyc: encyclopedia of Escherichia coli genes and metabolism. 55-58 - Heladia Salgado, Alberto Santos-Zavaleta
RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. 59-60 - M. Choudhary, C. Mackenzie, Nigel J. Mouncey, S. Kaplan:
RsGDB, the Rhodobacter sphaeroides Genome Database. 61-62 - Guy Perrière, Philippe Bessières, Bernard Labedan
The Enhanced Microbial Genomes Library. 63-65 - Yasukazu Nakamura
Extension of CyanoBase. CyanoMutants: repository of mutant information on Synechocystis sp. strain PCC6803. 66-68 - Peter E. Hodges, Andrew H. Z. McKee, Brian P. Davis, William E. Payne, James I. Garrels:
The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data. 69-73 - Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski
Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. 74-78 - Seung Yon Rhee, Shuai Weng, Deverie K. Bongard-Pierce, Margarita Garcia-Hernandez, Alice Malekian, David J. Flanders, J. Michael Cherry
Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database. 79-84 - Catherine Sanchez, Corinne Lachaize, Florence Janody
Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet database. 89-94 - Judith A. Blake
The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse. The Mouse Genome Database Group. 95-98 - Carol J. Bult, Debra M. Krupke
Electronic access to mouse tumor data: the Mouse Tumor Biology Database (MTB) project. 99-105 - Martin Ringwald, Mary E. Mangan
GXD: a gene expression database for the laboratory mouse. The Gene Expression Database Group. 106-112 - Frédéric Achard, Guy Vaysseix, Philippe Dessen, Emmanuel Barillot:
Virgil database for rich links (1999 update). 113-114 - Patricia Rodriguez-Tomé, Philip Lijnzaad:
The radiation hybrid database. 115-118 - Emmanuel Barillot
The HuGeMap Database: interconnection and visualization of human genome maps. 119-122 - Ulf Leser, Hugues Roest Crollius
IXDB, an X chromosome integrated database (update). 123-127 - Marcella Attimonelli, N. Altamura, R. Benne, C. Boyen, A. Brennicke, A. Carone, J. M. Cooper, Domenica D'Elia
MitBASE: a comprehensive and integrated mitochondrial DNA database. 128-133 - Cecilia Lanave, Marcella Attimonelli, Mariateresa De Robertis, Flavio Licciulli
Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences. 134-137 - Florian Burckhardt, Arndt von Haeseler, Sonja Meyer:
HvrBase: compilation of mtDNA control region sequences from primates. 138-142 - Marcella Attimonelli, J. M. Cooper, Domenica D'Elia
Update of the Human MitBASE database. 143-146 - B. de Pinto, S. B. Malladi, N. Altamura:
MitBASE pilot: a database on nuclear genes involved in mitochondrial biogenesis and its regulation in Saccharomyces cerevisiae. 147-149 - A. Carone, S. B. Malladi, Marcella Attimonelli, Cecilia Saccone:
Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences. 150-152 - Curt Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, Thomas Klopstock, R. Lill
MITOP: database for mitochondria-related proteins, genes and diseases. 153-155 - Luigi R. Ceci
PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes. 156-157 - Maciej Szymanski
5S Ribosomal RNA Data Bank. 158-160 - Dmitry A. Samarsky, Maurille J. Fournier:
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. 161-164 - Kelly P. Williams:
The tmRNA website. 165-166 - Jacek Wower, Christian Zwieb:
The tmRNA database (tmRDB). 167 - Sonja Hinz, H. Ulrich Göringer:
The guide RNA database (3.0). 168 - Tore Samuelsson, Christian Zwieb:
The Signal Recognition Particle Database (SRPDB). 169-170 - Bonnie L. Maidak, James R. Cole, Charles T. Parker Jr.
A new version of the RDP (Ribosomal Database Project). 171-173 - Peter De Rijk, Elmar Robbrecht, Sybren de Hoog, An Caers, Yves Van de Peer, Rupert De Wachter:
Database on the structure of large subunit ribosomal RNA. 174-178 - Yves Van de Peer, Elmar Robbrecht, Sybren de Hoog, An Caers, Peter De Rijk, Rupert De Wachter:
Database on the structure of small subunit ribosomal RNA. 179-183 - Pavel V. Baranov
The Database of Ribosomal Cross-links: an update. 184-185 - Daniel A. Lafontaine, Patrick Deschênes, Frédéric Bussière, Véronique Poisson, Jean-Pierre Perreault:
The viroid and viroid-like RNA database. 186-187 - Graziano Pesole
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. 188-191 - Volker A. Erdmann, Maciej Szymanski
Collection of mRNA-like non-coding RNAs. 192-195 - Jef Rozenski
The RNA Modification Database: 1999 update. 196-197 - John S. Garavelli
The RESID Database of protein structure modifications. 198-199 - Christian J. Stoeckert Jr., Fidel Salas, Brian P. Brunk, G. Christian Overton:
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis. 200-203 - Victoria Hawkins, David Doll, Roger Eugene Bumgarner, Todd Smith, Chris Abajian, Leroy E. Hood, Peter S. Nelson:
PEDB: the Prostate Expression Database. 204-208 - Marie-Paule Lefranc
IMGT, the international ImMunoGeneTics database. 209-212 - Thomas Immervoll, Matthias Wjst:
Current status of the Asthma and Allergy Database. 213-214 - Kay Hofmann
The PROSITE database, its status in 1999. 215-219 - Terri K. Attwood
PRINTS prepares for the new millennium. 220-225 - Jorja G. Henikoff, Steven Henikoff
New features of the Blocks Database servers. 226-228 - Chris P. Ponting
SMART: identification and annotation of domains from signalling and extracellular protein sequences. 229-232 - Kirill Degtyarenko, A. C. North, John B. C. Findlay:
PROMISE: a database of bioinorganic motifs. 233-236 - Andres Kreegipuu, Nikolaj Blom
PhosphoBase, a database of phosphorylation sites: release 2.0. 237-239 - Aron Marchler-Bauer
MMDB: Entrez's 3D structure database. 240-243 - Liisa Holm
Protein folds and families: sequence and structure alignments. 244-247 - Victor V. Solovyev
INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects. 248-250 - Steven E. Brenner, Derren Barken, Michael Levitt:
The PRESAGE database for structural genomics. 251-253 - Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia:
SCOP: a Structural Classification of Proteins database. 254-256 - János Murvai, Kristian Vlahovicek
The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments. 257-259 - Alex Bateman
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. 260-262 - Florence Corpet, Jérôme Gouzy, Daniel Kahn:
Recent improvements of the ProDom database of protein domain families. 263-267 - Ivan A. Adzhubei
ISSD Version 2.0: taxonomic range extended. 268-271 - Cathy H. Wu
ProClass Protein Family Database. 272-274 - Christine A. Orengo, Frances M. G. Pearl
The CATH Database provides insights into protein structure/function relationships. 275-279 - José María Carazo, Ernst H. K. Stelzer
Organising multi-dimensional biological image information: the BioImage Database. 280-283 - Geetha Y. Srinivasarao, Lai-Su L. Yeh, Christopher R. Marzec, Bruce C. Orcutt, Winona C. Barker, Friedhelm Pfeiffer
Database of protein sequence alignments: PIR-ALN. 284-285 - M. Michael Gromiha, Jianghong An, Hidetoshi Kono
ProTherm: Thermodynamic Database for Proteins and Mutants. 286-288 - Christine Hoogland
The SWISS-2DPAGE database: what has changed during the last year. 289-291 - Yasukazu Nakamura
Codon usage tabulated from the international DNA sequence databases; its status 1999. 292 - Mark E. Dalphin
TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions. 293-294 - Stephane Rombauts
PlantCARE, a plant cis-acting regulatory element database. 295-296 - Kenichi Higo, Yoshihiro Ugawa, Masao Iwamoto, Tomoko Korenaga:
Plant cis-acting regulatory DNA elements (PLACE) database: 1999. 297-300 - Mikhail S. Gelfand
ASDB: database of alternatively spliced genes. 301-302 - Nikolay A. Kolchanov
Transcription Regulatory Regions Database (TRRD): its status in 1999. 303-306 - Rouaïda Périer, Thomas Junier, Claude Bonnard, Philipp Bucher:
The Eukaryotic Promoter Database (EPD): recent developments. 307-309 - Amos Bairoch
The ENZYME data bank in 1999. 310-311 - Richard J. Roberts
REBASE-restriction enzymes and methylases. 312-313 - James W. Brown:
The Ribonuclease P Database. 314 - David Ghosh:
Object oriented Transcription Factors Database (ooTFD). 315-317 - T. Heinemeyer, Xin Chen, Holger Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, T. Meinhardt, Ingmar Reuter, Frank Schacherer, Edgar Wingender
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. 318-322 - Izabela Makalowska
Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci. 323-324 - Neil D. Rawlings
MEROPS: the peptidase database. 325-331 - Maciej Szymanski
The aminoacyl-tRNA Synthetase Data Bank (AARSDB). 332-335 - Sharmila Banerjee-Basu, Erik S. Ferlanti, Joseph F. Ryan
The Homeodomain Resource: sequences, structures and genomic information. 336-337 - Mikita Suyama
HUGE: a database for human large proteins identified by Kazusa cDNA sequencing project. 338-339 - Nicolas Le Novère, Jean-Pierre Changeux:
The Ligand Gated Ion Channel Database. 340-342 - Emmanouil Skoufos, Matthew D. Healy
Olfactory Receptor Database: a database of the largest eukaryotic gene family. 343-345 - Francine B. Perler:
InBase, the New England Biolabs Intein Database. 346-347 - Robert W. Shafer, Derek Stevenson, Bryan Chan:
Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database. 348-352 - Frank Dorkeld, Alain Bernheim, Philippe Dessen, Jean-Loup Huret:
A database on cytogenetics in haematology and oncology. 353-354 - Takeshi Kawabata, Motonori Ota, Ken Nishikawa:
The Protein Mutant Database. 355-357 - Shinsei Minoshima, Susumu Mitsuyama, Saho Ohno, Takashi Kawamura
Keio Mutation Database for eye disease genes (KMeyeDB). 358-361 - Kaj A. E. Stenberg, Pentti Riikonen, Mauno Vihinen
KinMutBase, a database of human disease-causing protein kinase mutations. 362-364 - Flavio Licciulli
KEYnet: a keywords database for biosequences functional organization. 365-367 - Shuichi Kawashima
AAindex: Amino Acid Index Database. 368-369 - Ramneek Gupta
O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins. 370-372 - Lynda B. M. Ellis, C. Douglas Hershberger, Lawrence P. Wackett:
The University of Minnesota Biocatalysis/Biodegradation Database: specialized metabolism for functional genomics. 373-376 - Susumu Goto, Takaaki Nishioka, Minoru Kanehisa:
LIGAND database for enzymes, compounds and reactions. 377-379
Volume 27, Number 13, July 1999
- Tom J. Parry, Cynthia Cushman, Anna M. Gallegos, Arun B. Agrawal, Michele Richardson, Lori E. Andrews, Lara Maloney, Victor R. Mokler, Francine E. Wincott, Pamela A. Pavco:
Bioactivity of anti-angiogenic ribozymes targeting Flt-1 and KDR mRNA. 2569-2577 - Alberto di Silvio, Carol Imbriano
Dissection of the NF-Y transcriptional activation potential. 2578-2584 - Peter G. Zaphiropoulos:
RNA molecules containing exons originating from different members of the cytochrome P450 2C gene subfamily (CYP2C) in human epidermis and liver. 2585-2590 - Hideto Yonekura, Hideyuki Migita, Shigeru Sakurai, Hua Wang, Shin-ichi Harada, Md. Joynal Abedin, Sho-ichi Yamagishi, Hiroshi Yamamoto:
Antisense display - a method for functional gene screening: evaluation in a cell-free system and isolation of angiogenesis-related genes. 2591-2600 - Tatyana Shamma, Ian S. Haworth:
Spermine inhibition of the 2, 5-diaziridinyl-1, 4-benzoquinone (DZQ) crosslinking reaction with DNA duplexes containing poly(purine). poly(pyrimidine) tracts. 2601-2609 - Richard T. Blaszak, Vladimir Potaman, Richard R. Sinden, John J. Bissler
DNA structural transitions within the PKD1 gene. 2610-2617 - Martin Lützelberger, Thomas Groß, Norbert F. Käufer:
Srp2, an SR protein family member of fission yeast: in vivo characterization of its modular domains. 2618-2626 - Thangavel Alphonse Thanaraj:
A clean data set of EST-confirmed splice sites from Homo sapiens and standards for clean-up procedures. 2627-2637 - Pavel Janscak
Single amino acid substitutions in the HsdR subunit of the type IB restriction enzyme EcoAI uncouple the DNA translocation and DNA cleavage activities of the enzyme. 2638-2643 - D. Steponaviciene, Z. Maneliene, M. Petrusyte, A. Janulaitis:
BseSI, a restriction endonuclease from Bacillus stearothermophilus Jo 10-553, which recognizes the novel hexanucleotide sequence 5'- G(G/T)GC(A/C)C-3'. 2644-2645 - Olga I. Ornatsky, David M. Cox, Padma Tangirala, John J. Andreucci, Zoë A. Quinn, Jeffrey L. Wrana, Ron Prywes, Yie-Teh Yu, John C. McDermott:
Post-translational control of the MEF2A transcriptional regulatory protein. 2646-2654 - Stuart Wilson, Nicholas Warr, Deborah L. Taylor, Felicity Z. Watts:
The role of Schizosaccharomyces pombe Rad32, the Mre11 homologue, and other DNA damage response proteins in non-homologous end joining and telomere length maintenance. 2655-2661 - T. Fujino, N. Navaratnam, A. Jarmuz, Arndt von Haeseler, James Scott:
C-->U editing of apolipoprotein B mRNA in marsupials: identification and characterisation of APOBEC-1 from the American opossum Monodelphus domestica. 2662-2671 - Colin B. Reese, Quanlai Song:
A new approach to the synthesis of branched and branched cyclic oligoribonucleotides. 2672-2681 - Julie Dawn Thompson, Frédéric Plewniak
A comprehensive comparison of multiple sequence alignment programs. 2682-2690 - Juan Aymami, Christine M. Nunn, Stephen Neidle:
DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand. 2691-2698 - A. Debin, Cyril Laboulais, Mohammed Ouali, C. Malvy, Marc Le Bret, F. Svinarchuk:
Stability of G, A triple helices. 2699-2707 - Lela Johnson, Paul D. Gershon:
RNA binding characteristics and overall topology of the vaccinia poly(A) polymerase-processivity factor-primer complex. 2708-2721 - Sébastien Gingras, Jacques Simard
p300/CBP is required for transcriptional induction by interleukin-4 and interacts with Stat6. 2722-2729 - L. Meunier, R. Mayer, M. Monsigny, A. C. Roche:
The nuclear export signal-dependent localization of oligonucleopeptides enhances the inhibition of the protein expression from a gene transcribed in cytosol. 2730-2736 - Claudio D. Giannini, W. Kurt Roth, Albrecht Piiper, Stefan Zeuzem:
Enzymatic and antisense effects of a specific anti-Ki-ras ribozyme in vitro and in cell culture. 2737-2744 - Sonia Broccoli, Jean-François Marquis, Barbara Papadopoulou, Martin Olivier, Marc Drolet:
Characterization of a Leishmania donovani gene encoding a protein that closely resembles a type IB topoisomerase. 2745-2752 - Jae-Young Oh, Jinmi Kim:
ATP hydrolysis activity of the DEAD box protein Rok1p is required for in vivo ROK1 function. 2753-2759 - Neeman Mohibullah, Amy Donner, Joseph A. Ippolito, Trevor Williams:
SELEX and missing phosphate contact analyses reveal flexibility within the AP-2[alpha] protein: DNA binding complex. 2760-2769 - Masayuki Nashimoto, Duane R. Wesemann
Long 5' leaders inhibit removal of a 3' trailer from a precursor tRNA by mammalian tRNA 3' processing endoribonuclease. 2770-2776 - Saija Haapa, Suvi Taira, Eini Heikkinen, Harri Savilahti
An efficient and accurate integration of mini-Mu transposons in vitro: a general methodology for functional genetic analysis and molecular biology applications. 2777-2784 - Marta Palmieri, Maria Paola Sasso, Rossana Monese, Marcello Merola, Laura Faggioli, Michael Tovey
Interaction of the nuclear protein CBF1 with the kappaB site of the IL- 6 gene promoter. 2785-2791 - Stefan Lutz, Petra Burgstaller, Steven A. Benner:
An in vitro screening technique for DNA polymerases that can incorporate modified nucleotides. Pseudo-thymidine as a substrate for thermostable polymerases. 2792-2798 - Catherine H. Botting, Ronald T. Hay
Characterisation of the adenovirus preterminal protein and its interaction with the POU homeodomain of NFIII (Oct-1). 2799-2805 - Gan Wang, Xiaoxin Xu, Betty Pace, David A. Dean, Peter M. Glazer
Peptide nucleic acid (PNA) binding-mediated induction of human gamma- globin gene expression. 2806-2813 - Richard Guajardo, Rui Sousa
Characterization of the effects of Escherichia coli replication terminator protein (Tus) on transcription reveals dynamic nature of the tus block to transcription complex progression. 2814-2824
- Marlene Maroun, Ami Aronheim:
A novel in vivo assay for the analysis of protein-protein interaction. 4-
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