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Application of Semantic Technology in Biodiversity Science, 2018

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Anne E. Thessen:
Application of Semantic Technology in Biodiversity Science. Studies on the Semantic Web 33, IOS Press 2018, ISBN 978-1-61499-853-2

Part I. Introduction

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Anne E. Thessen:
Application of Semantic Technology in Biodiversity Science: An Introduction. 3-11

Part II. Linked Biodiversity Data

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Steven J. Baskauf, Joel Sachs:
Darwin Core as a Vocabulary for Expressing Biodiversity Data as RDF. 15-28
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Rathachai Chawuthai, Utsugi Jinbo, Hideaki Takeda:
Linked Open Data Model for Taxonomic Information. 29-52
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Matthew J. Yoder, Michael B. Twidale, Andrea K. Thomer, Lars Vogt, Nico M. Franz, Jinlong Guo, Andrew R. Deans, James P. Balhoff:
Taxonomy and the Production of Semantic Phenotypes. 53-77

Part III. Biodiversity Ontologies

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Ramona L. Walls, Pier Luigi Buttigieg, John Deck, Robert P. Guralnick, John Wieczorek:
Integrating and Managing Biodiversity Data with the Biocollections Ontology. 81-105
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Robert Hoehndorf, Claus Weiland, Marco Schmidt, Quentin Groom, George Gosline, Stefan Dressler, Thomas Hamann:
The Flora Phenotype Ontology (FLOPO) and the FLOPO Knowledgebase. 107-119
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Fabrice Teletchea:
Development of a Fish Reproduction Ontology to Support STOREFISH, a Database of Fish Reproductive Strategies. 121-134

Part IV. Novel Insights Through Application

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Nic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn:
Association Mapping for Forest Trees with CartograTree. 137-149
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Carrine E. Blank, Hong Cui, Jin Mao, Lisa R. Moore, Robert W. Thacker, Ramona L. Walls:
Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software. 151-185
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Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp, James A. Macklin, Chelsea D. Specht, Todd J. Vision, Ramona L. Walls, Carolyn J. Lawrence-Dill:
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. 187-205
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Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield:
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. 207-224

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