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Atsuko Yamaguchi
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2020 – today
- 2024
- [e2]Atsuko Yamaguchi, Shusaku Egami, Kouji Kozaki, Takahiro Kawamura, Boris Villazón-Terrazas, Marut Buranarach:
Proceedings of the Workshop, Poster and Demonstration Sessions at IJCKG 2023 co-located with 12th International Joint Conference on Knowledge Graphs (IJCKG 2023), Tokyo, Japan, December 8-9, 2023. CEUR Workshop Proceedings 3659, CEUR-WS.org 2024 [contents] - 2023
- [c29]Atsuko Yamaguchi, Yasunori Yamamoto:
A Comparative Study on Storing and Retrieval of URIs for Life Sciences Databases. IJCKG (Workshop/Poster/Demo) 2023: 9-12 - [c28]Jae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi:
Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases. SWAT4HCLS 2023: 87-91 - [e1]Atsuko Yamaguchi, Andrea Splendiani, M. Scott Marshall, Chris Baker, Jerven T. Bolleman, Albert Burger, Leyla Jael Castro, Ole Eigenbrod, Sabine Österle, Martin Romacker, Andra Waagmeester:
14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023. CEUR Workshop Proceedings 3415, CEUR-WS.org 2023 [contents] - 2021
- [c27]Atsuko Yamaguchi, Jae-Moon Shin, Toyofumi Fujiwara:
Gene Ranking based on Paths from Phenotypes to Genes on Knowledge Graph. IJCKG 2021: 131-134 - 2020
- [i2]Rutger A. Vos
, Toshiaki Katayama
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [c26]Tatsuya Kushida, Kouji Kozaki, Yasunori Yamamoto, Atsuko Yamaguchi, Takahiro Kawamura, Takako Nakagawa, Yuka Tateisi, Toshihisa Takagi:
Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts. ICBO 2019: 1 - [c25]Atsuko Yamaguchi
Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences. JIST (2) 2019: 137-144 - [c24]Atsuko Yamaguchi, Hideki Hatanaka, Satoshi Fukuchi, Motonori Ota:
Semantic Integration of Intrinsically Disordered Proteins and Existing DBs. SWAT4HCLS 2019: 147-148 - [c23]Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi:
UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences. SWAT4HCLS 2019: 151-152 - [c22]Yasunori Yamamoto, Atsuko Yamaguchi:
Finding RDF Data you need by Umaka Suite. SWAT4HCLS 2019: 157-158 - [i1]Toshiaki Katayama
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [j14]Yasunori Yamamoto
YummyData: providing high-quality open life science data. Database J. Biol. Databases Curation 2018: bay022 (2018) - [c21]Atsuko Yamaguchi
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment. JIST 2018: 418-426 - 2017
- [c20]Atsuko Yamaguchi
Semantic Graph Analysis for Federated LOD Surfing in Life Sciences. JIST 2017: 268-276 - [c19]Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences. SWAT4LS 2017 - 2016
- [c18]Yasunori Yamamoto, Atsuko Yamaguchi, Andrea Splendiani:
Umaka-Yummy Data: Where Providers and Consumers in Life Sciences Communicate with Each Other. JIST (Workshops & Posters) 2016: 50-53 - [c17]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases. JIST (Workshops & Posters) 2016: 58-61 - [c16]Atsuko Yamaguchi
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data. JIST 2016: 136-151 - [c15]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data. ISWC (Posters & Demos) 2016 - [c14]Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
SPARQL Query Construction with Monitoring Service for Endpoints. SWAT4LS 2016 - [c13]Yasunori Yamamoto, Atsuko Yamaguchi, Andrea Splendiani:
Umaka-Yummy Data: A Place to Facilitate Communication between Data Providers and Consumers. SWAT4LS 2016 - 2015
- [c12]Atsuko Yamaguchi
Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases. JIST 2015: 321-330 - [c11]Hongyan Wu, Atsuko Yamaguchi, Jin-Dong Kim:
Dynamic Join Order Optimization for SPARQL Endpoint Federation. SSWS@ISWC 2015: 48-62 - [c10]Atsuko Yamaguchi, Katsuhiko Okubo, Norio Kobayashi, Kouji Kozaki, Sadahiro Kumagai, Kai Lenz, Tomoe Nobusada, Hongyan Wu, Yasunori Yamamoto, Hideki Hatanaka:
RDF-Based Integration with SPARQL Building System for Life Science Database Archive. SWAT4LS 2015: 195-196 - 2014
- [j13]Toshiaki Katayama, Mark D. Wilkinson
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5: 5 (2014) - [j12]Hongyan Wu
BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data. J. Biomed. Semant. 5: 32 (2014) - [j11]Shin Kawano
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model. Nucleic Acids Res. 42(Webserver-Issue): 442-448 (2014) - [c9]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Norio Kobayashi:
An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases. IESD@ISWC 2014 - [c8]Norio Kobayashi, Kai Lenz, Hongyan Wu, Kouji Kozaki, Atsuko Yamaguchi:
Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets. SWAT4LS 2014 - 2013
- [j10]Yasunori Yamamoto, Atsuko Yamaguchi
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia. J. Biomed. Semant. 4: 8 (2013) - 2011
- [j9]Yasunori Yamamoto, Atsuko Yamaguchi
Allie: a database and a search service of abbreviations and long forms. Database J. Biol. Databases Curation 2011 (2011) - [j8]Toshiaki Katayama, Mark D. Wilkinson
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2: 4 (2011) - [c7]Atsuko Yamaguchi
Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering. BIBM 2011: 544-549 - [c6]Atsuko Yamaguchi
Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering. ICMLA (2) 2011: 72-77 - [c5]Yasunori Yamamoto, Atsuko Yamaguchi
Building linked open data using approximate string matching methods and domain specific resources. SWAT4LS 2011: 121-122 - 2010
- [j7]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [c4]Jin-Dong Kim, Yasunori Yamamoto, Atsuko Yamaguchi
Natural Language Query Processing for Life Science Knowledge - Position Paper. AMT 2010: 158-165
2000 – 2009
- 2005
- [j6]Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita
A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains. IEEE Trans. Knowl. Data Eng. 17(8): 1051-1064 (2005) - 2004
- [j5]Atsuko Yamaguchi
Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees. Inf. Process. Lett. 92(2): 57-63 (2004) - [j4]Kiyoko F. Aoki
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Res. 32(Web-Server-Issue): 267-272 (2004) - [j3]Kiyoko F. Aoki
Managing and Analyzing Carbohydrate Data. SIGMOD Rec. 33(2): 33-38 (2004) - [c3]Kiyoko F. Aoki
Application of a new probabilistic model for recognizing complex patterns in glycans. ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14 - 2003
- [j2]Hiroshi Mamitsuka
Mining biologically active patterns in metabolic pathways using microarray expression profiles. SIGKDD Explor. 5(2): 113-121 (2003) - [c2]Atsuko Yamaguchi, Hiroshi Mamitsuka
Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees. ISAAC 2003: 58-67
1990 – 1999
- 1999
- [c1]Atsuko Yamaguchi
An Approximation Algorithm for the Two-Layered Graph Drawing Problem. COCOON 1999: 81-91 - 1997
- [j1]Atsuko Yamaguchi, Koji Nakano, Satoru Miyano:
An Approximation Algorithm for the Minimum Common Supertree Problem. Nord. J. Comput. 4(2): 303-316 (1997)
Coauthor Index
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