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Peter W. Rose
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2020 – today
- 2023
- [j24]John H. Morris, Karthik Soman
, Rabia E. Akbas
The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. Bioinform. 39(2) (2023) - [c4]Mary P. Thomas
Developing a Best Practices Training Program in Cyberinfrastructure-Enabled Machine Learning Research. PEARC 2023: 390-394 - [i2]Karthik Soman
Biomedical knowledge graph-enhanced prompt generation for large language models. CoRR abs/2311.17330 (2023) - 2022
- [j23]Sergio E. Baranzini
A Biomedical Open Knowledge Network Harnesses the Power of AI to Understand Deep Human Biology. AI Mag. 43(1): 46-58 (2022) - [j22]Daniel K. Gehlhaar
The Pfizer Crystal Structure Database: An essential tool for structure-based design at Pfizer. J. Comput. Chem. 43(15): 1053-1062 (2022) - [c3]Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI 2022: 465-468 - 2021
- [j21]Faryad Sahneh, Meghan A. Balk
Ten simple rules to cultivate transdisciplinary collaboration in data science. PLoS Comput. Biol. 17(5) (2021)
2010 – 2019
- 2019
- [j20]Stephen K. Burley, Helen M. Berman
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 47(Database-Issue): D464-D474 (2019) - [j19]Aleix Lafita
BioJava 5: A community driven open-source bioinformatics library. PLoS Comput. Biol. 15(2) (2019) - [j18]Spencer E. Bliven
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. PLoS Comput. Biol. 15(4) (2019) - [j17]Adam Rule
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLoS Comput. Biol. 15(7) (2019) - 2018
- [j16]Alexander S. Rose
NGL viewer: web-based molecular graphics for large complexes. Bioinform. 34(21): 3755-3758 (2018) - [i1]Adam Rule, Amanda Birmingham, Cristal Zuñiga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose
Ten Simple Rules for Reproducible Research in Jupyter Notebooks. CoRR abs/1810.08055 (2018) - 2017
- [j15]Jianjiong Gao
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. Bioinform. 33(13): 2047-2049 (2017) - [j14]Brock A. Luty
The need for scientific software engineering in the pharmaceutical industry. J. Comput. Aided Mol. Des. 31(3): 301-304 (2017) - [j13]Peter W. Rose
The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 45(Database-Issue): D271-D281 (2017) - [j12]Anthony R. Bradley
MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PLoS Comput. Biol. 13(6) (2017) - 2016
- [j11]Andreas Prlic
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. Bioinform. 32(24): 3833-3835 (2016) - [c2]Alexander S. Rose
Web-based molecular graphics for large complexes. Web3D 2016: 185-186 - 2015
- [j10]Gregory B. Quinn, Chunxiao Bi, Cole H. Christie, Kyle Pang, Andreas Prlic
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank. Bioinform. 31(1): 126-127 (2015) - [j9]Peter W. Rose
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 43(Database-Issue): 345-356 (2015) - 2013
- [j8]Peter W. Rose
The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res. 41(Database-Issue): 475-482 (2013) - 2012
- [j7]Andreas Prlic
BioJava: an open-source framework for bioinformatics in 2012. Bioinform. 28(20): 2693-2695 (2012) - 2011
- [j6]Wolfgang Bluhm, Bojan Beran, Chunxiao Bi, Dimitris Dimitropoulos, Andreas Prlic
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. Database J. Biol. Databases Curation 2011 (2011) - [j5]Peter W. Rose
The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res. 39(Database-Issue): 392-401 (2011) - 2010
- [j4]Andreas Prlic
Pre-calculated protein structure alignments at the RCSB PDB website. Bioinform. 26(23): 2983-2985 (2010) - [j3]Andreas Prlic
Integration of open access literature into the RCSB Protein Data Bank using BioLit. BMC Bioinform. 11: 220 (2010) - [j2]Philip E. Bourne, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Roland L. Dunbrack Jr.
Will Widgets and Semantic Tagging Change Computational Biology? PLoS Comput. Biol. 6(2) (2010)
2000 – 2009
- 2000
- [j1]Gennady Verkhivker
Deciphering common failures in molecular docking of ligand-protein complexes. J. Comput. Aided Mol. Des. 14(8): 731-751 (2000)
1990 – 1999
- 1999
- [c1]Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Paul A. Rejto, Peter W. Rose, Gennady Verkhivker:
Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing. Pacific Symposium on Biocomputing 1999: 426-437
Coauthor Index
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