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Paolo Tieri

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2020 – today

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2023
[j14]
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Paola Stolfi, Andrea Mastropietro, Giuseppe Pasculli, Paolo Tieri, Davide Vergni:
NIAPU: network-informed adaptive positive-unlabeled learning for disease gene identification. Bioinform. 39(2) (2023)
[j13]
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Maria Concetta Palumbo, Albert A. de Graaf, Micaela Morettini, Paolo Tieri, Shaji Krishnan, Filippo Castiglione:
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis. Comput. Biol. Medicine 163: 107158 (2023)
[j12]
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  - journals/tcbb/CastiglioneNOPT23
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Filippo Castiglione, Christine Nardini, Elia Onofri, Marco Pedicini, Paolo Tieri:
Explainable Drug Repurposing Approach From Biased Random Walks. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1009-1019 (2023)
[c11]
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Enrico Mastrostefano, Alessandro Ravoni, Elia Onofri, Paolo Tieri, Filippo Castiglione:
Harnessing computational models to uncover the role of the immune system in tuberculosis treatment. BIBM 2023: 3725-3732
2022
[c10]
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  - conf/bibm/AmatyaSLT22
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Pratuat Amatya, Paola Stolfi, Flavio Lombardi, Paolo Tieri:
DruSiLa: an integrated, in-silico disease similarity-based approach for drug repurposing. BIBM 2022: 1879-1885
[c9]
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  - conf/bibm/LucaCBMPT22
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Riccardo De Luca, Marco Carfora, Gonzalo Blanco, Andrea Mastropietro, Manuela Petti, Paolo Tieri:
PROCONSUL: PRObabilistic exploration of CONnectivity Significance patterns for disease modULe discovery. BIBM 2022: 1941-1947
[c8]
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  - conf/eurova-ws/PalleschiPTA22
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Alessia Palleschi, Manuela Petti, Paolo Tieri, Marco Angelini:
Toward Disease Diagnosis Visual Support Bridging Classic and Precision Medicine. EuroVA@EuroVis 2022: 25-29
2021
[j11]
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  - journals/bib/WangPCMSCCTWMMZ21
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Haiying Wang, Estelle Pujos-Guillot, Blandine Comte, João Luís de Miranda, Vojtech Spiwok, Ivan Chorbev, Filippo Castiglione, Paolo Tieri, Steven Watterson, Roisin McAllister, Tiago De Melo Malaquias, Massimiliano Zanin, Taranjit Singh Rai, Huiru Zheng:
Deep learning in systems medicine. Briefings Bioinform. 22(2): 1543-1559 (2021)
[j10]
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  - journals/bioinformatics/LazarevaCYBBTKL21
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Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List:
BiCoN: network-constrained biclustering of patients and omics data. Bioinform. 37(16): 2398-2404 (2021)
[i1]
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  - journals/corr/abs-2108-06158
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Paola Stolfi, Andrea Mastropietro, Giuseppe Pasculli, Paolo Tieri, Davide Vergni:
Adaptive Positive-Unlabelled Learning via Markov Diffusion. CoRR abs/2108.06158 (2021)
2020
[j9]
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  - journals/bioinformatics/BlumenthalVLBTK20
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David B. Blumenthal, Lorenzo Viola, Markus List, Jan Baumbach, Paolo Tieri, Tim Kacprowski:
EpiGEN: an epistasis simulation pipeline. Bioinform. 36(19): 4957-4959 (2020)
[j8]
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  - journals/bmcbi/StolfiVPTGC20
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Paola Stolfi, Ilaria Valentini, Maria Concetta Palumbo, Paolo Tieri, Andrea Grignolio, Filippo Castiglione:
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BMC Bioinform. 21-S(17): 508 (2020)

2010 – 2019

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2019
[j7]
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  - journals/bib/ZaninCSSVTCGZBS19
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Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt:
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20(3): 1057-1062 (2019)
[j6]
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  - journals/cmmm/PranaTPMC19
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Vinca Prana, Paolo Tieri, Maria Concetta Palumbo, Emiliano Mancini, Filippo Castiglione:
Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes. Comput. Math. Methods Medicine 2019: 7525834:1-7525834:8 (2019)
[c7]
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  - conf/bibm/CelestiniCMPCT19
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Alessandro Celestini, Marco Cianfriglia, Enrico Mastrostefano, Alessandro Palma, Filippo Castiglione, Paolo Tieri:
Critical nodes reveal peculiar features of human essential genes and protein interactome. BIBM 2019: 2121-2128
[c6]
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Paola Stolfi, Ilaria Valentini, Maria Concetta Palumbo, Paolo Tieri, Andrea Grignolio, Filippo Castiglione:
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BIBM 2019: 2214-2221
[r1]
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  - reference/bioinf/TieriFPAPC19
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Paolo Tieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Paci, Filippo Castiglione:
Network Inference and Reconstruction in Bioinformatics. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 805-813
2018
[j5]
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  - journals/ploscb/PalumboMTDSC18
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Maria Concetta Palumbo, Micaela Morettini, Paolo Tieri, Fasma Diele, Massimo Sacchetti, Filippo Castiglione:
Personalizing physical exercise in a computational model of fuel homeostasis. PLoS Comput. Biol. 14(4) (2018)
[c5]
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  - conf/bibm/FreitasMRTC18
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Leandro Martins de Freitas, Tatiani Uceli Maioli, Henrique Assis Lopes de Ribeiro, Paolo Tieri, Filippo Castiglione:
A mathematical model of Chagas disease infection predicts inhibition of the immune system. BIBM 2018: 1374-1379
[c4]
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  - conf/bibm/RibeiroMFTC18
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Henrique Assis Lopes de Ribeiro, Tatiani Uceli Maioli, Leandro Martins de Freitas, Paolo Tieri, Filippo Castiglione:
A mathematical model of murine macrophage infected with Leishmania sp. BIBM 2018: 1425-1430
2016
[j4]
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  - journals/bib/CappuccioTC16
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Antonio Cappuccio, Paolo Tieri, Filippo Castiglione:
Multiscale modelling in immunology: a review. Briefings Bioinform. 17(3): 408-418 (2016)
[j3]
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Filippo Castiglione, Paolo Tieri, Alessandro Palma, Abdul Salam Jarrah:
Statistical ensemble of gene regulatory networks of macrophage differentiation. BMC Bioinform. 17(S-19): 119-128 (2016)
2014
[c3]
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  - conf/wob/TieriPCSC14
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Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni, Filippo Castiglione:
Multi-scale Simulation of T Helper Lymphocyte Differentiation. BSB 2014: 123-134

2000 – 2009

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2007
[j2]
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  - journals/ijbc/RemondiniNFTSMC07
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Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani:
Networks from Gene Expression Time Series: Characterization of Correlation Patterns. Int. J. Bifurc. Chaos 17(7): 2477-2483 (2007)
2005
[j1]
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  - journals/bioinformatics/TieriVLCMRF05
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Paolo Tieri, Silvana Valensin, Vito Latora, Gastone C. Castellani, Massimo Marchiori, Daniel Remondini, Claudio Franceschi:
Quantifying the relevance of different mediators in the human immune cell network. Bioinform. 21(8): 1639-1643 (2005)
[c2]
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  - conf/wirn/RemondiniTVVFBC05
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Daniel Remondini, Paolo Tieri, Silvana Valensin, Ettore Verondini, Claudio Franceschi, F. Bersani, Gastone C. Castellani:
A General Learning Rule for Network Modeling of Neuroimmune Interactome. WIRN/NAIS 2005: 286-292
2003
[c1]
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  - conf/icaris/TieriVFMC03
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Paolo Tieri, Silvana Valensin, Claudio Franceschi, Carlo Morandi, Gastone C. Castellani:
Memory and Selectivity in Evolving Scale-Free Immune Networks. ICARIS 2003: 93-101

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