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Jeremy Logan

Jeremy S. Logan

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affiliation: Oak Ridge National Laboratory, TN, USA
affiliation: University of Tennessee, Knoxville, TN, USA

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2020 – today

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2022
[j10]
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Kshitij Mehta, Bryce Allen, Matthew Wolf, Jeremy Logan, Eric Suchyta, Swati Singhal, Jong Youl Choi, Keichi Takahashi, Kevin A. Huck, Igor Yakushin, Alan Sussman, Todd S. Munson, Ian T. Foster, Scott Klasky:
A codesign framework for online data analysis and reduction. Concurr. Comput. Pract. Exp. 34(14) (2022)
[j9]
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Eric Suchyta, Scott Klasky, Norbert Podhorszki, Matthew Wolf, Abolaji D. Adesoji, Choong-Seock Chang, Jong Choi, Philip E. Davis, Julien Dominski, Stéphane Ethier, Ian T. Foster, Kai Germaschewski, Berk Geveci, Chris Harris, Kevin A. Huck, Qing Liu, Jeremy Logan, Kshitij Mehta, Gabriele Merlo, Shirley V. Moore, Todd S. Munson, Manish Parashar, David Pugmire, Mark S. Shephard, Cameron W. Smith, Pradeep Subedi, Lipeng Wan, Ruonan Wang, Shuangxi Zhang:
The Exascale Framework for High Fidelity coupled Simulations (EFFIS): Enabling whole device modeling in fusion science. Int. J. High Perform. Comput. Appl. 36(1): 106-128 (2022)
[c31]
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Sean R. Wilkinson, Greg Eisenhauer, Anuj J. Kapadia, Kathryn Knight, Jeremy Logan, Patrick M. Widener, Matthew Wolf:
F*** workflows: when parts of FAIR are missing. e-Science 2022: 507-512
[i2]
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  - journals/corr/abs-2209-09022
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Sean R. Wilkinson, Greg Eisenhauer, Anuj J. Kapadia, Kathryn Knight, Jeremy Logan, Patrick M. Widener, Matthew Wolf:
F*** workflows: when parts of FAIR are missing. CoRR abs/2209.09022 (2022)
2021
[c30]
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Jeremy Logan, Greeshma A. Agasthya, Heidi A. Hanson, Matthew Wolf, Heechan Lee, Shaheen Dewji, Hong-Jun Yoon, Anuj J. Kapadia:
Creating a Tools Ecosystem for Cross-Discipline Environmental Data Reuse. IEEE BigData 2021: 3705-3708
[c29]
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Matthew Wolf, Jeremy Logan, Kshitij Mehta, Daniel A. Jacobson, Mikaela Cashman, Angelica M. Walker, Greg Eisenhauer, Patrick M. Widener, Ashley Cliff:
Reusability First: Toward FAIR Workflows. CLUSTER 2021: 444-455
2020
[j8]
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Jeremy Logan, Mark Ainsworth, Chuck Atkins, Jieyang Chen, Jong Choi, Junmin Gu, James Kress, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, Tahsin M. Kurç, Qing Liu, Kshitij Mehta, George Ostrouchov, Norbert Podhorszki, David Pugmire, Eric Suchyta, Nicholas Thompson, Ozan Tugluk, Lipeng Wan, Ruonan Wang, Ben Whitney, Matthew Wolf, Kesheng Wu, Scott Klasky:
Extending the Publish/Subscribe Abstraction for High-Performance I/O and Data Management at Extreme Scale. IEEE Data Eng. Bull. 43(1): 35-46 (2020)
[j7]
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William F. Godoy, Norbert Podhorszki, Ruonan Wang, Chuck Atkins, Greg Eisenhauer, Junmin Gu, Philip E. Davis, Jong Choi, Kai Germaschewski, Kevin A. Huck, Axel Huebl, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Kshitij Mehta, George Ostrouchov, Manish Parashar, Franz Poeschel, David Pugmire, Eric Suchyta, Keichi Takahashi, Nick Thompson, Seiji Tsutsumi, Lipeng Wan, Matthew Wolf, Kesheng Wu, Scott Klasky:
ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. SoftwareX 12: 100561 (2020)
[c28]
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Burlen Loring, Matthew Wolf, James Kress, Sergei Shudler, Junmin Gu, Silvio Rizzi, Jeremy Logan, Nicola J. Ferrier, E. Wes Bethel:
Improving Performance of M-to-N Processing and Data Redistribution in In Transit Analysis and Visualization. EGPGV@Eurographics/EuroVis 2020: 35-45
[c27]
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David Pugmire, James Kress, Jieyang Chen, Hank Childs, Jong Choi, Dmitry Ganyushin, Berk Geveci, Mark Kim, Scott Klasky, Xin Liang, Jeremy Logan, Nicole Marsaglia, Kshitij Mehta, Norbert Podhorszki, Caitlin Ross, Eric Suchyta, Nick Thompson, Steven Walton, Lipeng Wan, Matthew Wolf:
Visualization as a Service for Scientific Data. SMC 2020: 157-174
[c26]
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Jong Choi, Ruonan Wang, Randy Michael Churchill, Ralph Kube, Minjun Choi, Jinseop Park, Jeremy Logan, Kshitij Mehta, Greg Eisenhauer, Norbert Podhorszki, Matthew Wolf, Choong-Seock Chang, Scott Klasky:
Data Federation Challenges in Remote Near-Real-Time Fusion Experiment Data Processing. SMC 2020: 285-299
[i1]
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  - journals/corr/abs-2005-05424
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Nicholas Thompson, John Maddock, George Ostrouchov, Jeremy Logan, David Pugmire, Scott Klasky:
Towards 1ULP evaluation of Daubechies Wavelets. CoRR abs/2005.05424 (2020)

2010 – 2019

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2019
[j6]
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Dan Huang, Qing Liu, Jong Choi, Norbert Podhorszki, Scott Klasky, Jeremy Logan, George Ostrouchov, Xubin He, Matthew Wolf:
Can I/O Variability Be Reduced on QoS-Less HPC Storage Systems? IEEE Trans. Computers 68(5): 631-645 (2019)
[j5]
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Dan Huang, Qing Liu, Scott Klasky, Jun Wang, Jong Youl Choi, Jeremy Logan, Norbert Podhorszki:
Harnessing Data Movement in Virtual Clusters for In-Situ Execution. IEEE Trans. Parallel Distributed Syst. 30(3): 615-629 (2019)
[c25]
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Matthew Wolf, Julien Dominski, Gabriele Merlo, Jong Choi, Greg Eisenhauer, Stéphane Ethier, Kevin A. Huck, Scott Klasky, Jeremy Logan, Allen D. Malony, Chad Wood:
Scalable Performance Awareness for In Situ Scientific Applications. eScience 2019: 266-276
[c24]
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Jeremy Logan, Kshitij Mehta, Gerd Heber, Scott Klasky, Tahsin M. Kurç, Norbert Podhorszki, Patrick M. Widener, Matthew Wolf:
A Vision for Managing Extreme-Scale Data Hoards. ICDCS 2019: 1806-1817
[c23]
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Kshitij Mehta, Ian T. Foster, Scott Klasky, Bryce Allen, Matthew Wolf, Jeremy Logan, Eric Suchyta, Jong Choi, Keichi Takahashi, Igor Yakushin, Todd S. Munson:
A Codesign Framework for Online Data Analysis and Reduction. WORKS@SC 2019: 11-20
2018
[c22]
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  - conf/eScience/ChoiCDKMSAACCDD18
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Jong Youl Choi, Choong-Seock Chang, Julien Dominski, Scott Klasky, Gabriele Merlo, Eric Suchyta, Mark Ainsworth, Bryce Allen, Franck Cappello, Michael Churchill, Philip E. Davis, Sheng Di, Greg Eisenhauer, Stéphane Ethier, Ian T. Foster, Berk Geveci, Hanqi Guo, Kevin A. Huck, Frank Jenko, Mark Kim, James Kress, Seung-Hoe Ku, Qing Liu, Jeremy Logan, Allen D. Malony, Kshitij Mehta, Kenneth Moreland, Todd S. Munson, Manish Parashar, Tom Peterka, Norbert Podhorszki, Dave Pugmire, Ozan Tugluk, Ruonan Wang, Ben Whitney, Matthew Wolf, Chad Wood:
Coupling Exascale Multiphysics Applications: Methods and Lessons Learned. eScience 2018: 442-452
[c21]
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Scott Klasky, Matthew Wolf, Mark Ainsworth, Chuck Atkins, Jong Choi, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Arthur B. Maccabe, Kshitij Mehta, George Ostrouchov, Manish Parashar, Norbert Podhorszki, David Pugmire, Eric Suchyta, Lipeng Wan, Ruonan Wang:
A View from ORNL: Scientific Data Research Opportunities in the Big Data Age. ICDCS 2018: 1357-1368
2017
[c20]
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Jeremy Logan, Jong Youl Choi, Matthew Wolf, George Ostrouchov, Lipeng Wan, Norbert Podhorszki, William F. Godoy, Scott Klasky, Erich Lohrmann, Greg Eisenhauer, Chad Wood, Kevin A. Huck:
Extending Skel to Support the Development and Optimization of Next Generation I/O Systems. CLUSTER 2017: 563-571
[c19]
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Jong Youl Choi, Jeremy Logan, Matthew Wolf, George Ostrouchov, Tahsin M. Kurç, Qing Liu, Norbert Podhorszki, Scott Klasky, Melissa Romanus, Qian Sun, Manish Parashar, Randy Michael Churchill, Choong-Seock Chang:
TGE: Machine Learning Based Task Graph Embedding for Large-Scale Topology Mapping. CLUSTER 2017: 587-591
[c18]
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Qing Liu, Norbert Podhorszki, Jong Youl Choi, Jeremy Logan, Matthew Wolf, Scott Klasky, Tahsin M. Kurç, Xubin He:
StoreRush: An Application-Level Approach to Harvesting Idle Storage in a Best Effort Environment. ICCS 2017: 475-484
[c17]
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Scott Klasky, Eric Suchyta, Mark Ainsworth, Qing Liu, Ben Whitney, Matthew Wolf, Jong Youl Choi, Ian T. Foster, Mark Kim, Jeremy Logan, Kshitij Mehta, Todd S. Munson, George Ostrouchov, Manish Parashar, Norbert Podhorszki, David Pugmire, Lipeng Wan:
Exacution: Enhancing Scientific Data Management for Exascale. ICDCS 2017: 1927-1937
2016
[j4]
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Stephen Herbein, Sean McDaniel, Norbert Podhorszki, Jeremy Logan, Scott Klasky, Michela Taufer:
Performance characterization of irregular I/O at the extreme scale. Parallel Comput. 51: 17-36 (2016)
2015
[c16]
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  - conf/ppopp/JinLMLLPCK15
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Ye Jin, Mingliang Liu, Xiaosong Ma, Qing Liu, Jeremy Logan, Norbert Podhorszki, Jong Youl Choi, Scott Klasky:
Combining phase identification and statistic modeling for automated parallel benchmark generation. PPoPP 2015: 269-270
[c15]
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  - conf/sigmetrics/JinMLLLPCK15
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Ye Jin, Xiaosong Ma, Mingliang Liu, Qing Liu, Jeremy Logan, Norbert Podhorszki, Jong Youl Choi, Scott Klasky:
Combining Phase Identification and Statistic Modeling for Automated Parallel Benchmark Generation. SIGMETRICS 2015: 309-320
2014
[j3]
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Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron A. Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu:
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. 26(7): 1453-1473 (2014)
[j2]
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Samuel Schlachter, Stephen Herbein, Shuching Ou, Jeremy S. Logan, Sandeep Patel, Michela Taufer:
Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations. IEEE Des. Test 31(1): 40-50 (2014)
2013
[c14]
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Hongbo Zou, Karsten Schwan, Magdalena Slawiñska, Matthew Wolf, Greg Eisenhauer, Fang Zheng, Jai Dayal, Jeremy Logan, Qing Liu, Scott Klasky, Tanja Bode, Michael Clark, Matthew Kinsey:
FlexQuery: An online query system for interactive remote visual data exploration at large scale. CLUSTER 2013: 1-8
[c13]
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Stephen Herbein, Michael Matheny, Matthew Wezowicz, Jaron T. Krogel, Jeremy Logan, J. Kim, Scott Klasky, Michela Taufer:
Performance Impact of I/O on QMCPack Simulations at the Petascale and Beyond. CSE 2013: 92-99
[c12]
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Roselyne Tchoua, Jong Youl Choi, Scott Klasky, Qing Liu, Jeremy Logan, Kenneth Moreland, Jingqing Mu, Manish Parashar, Norbert Podhorszki, David Pugmire, Matthew Wolf:
ADIOS Visualization Schema: A First Step Towards Improving Interdisciplinary Collaboration in High Performance Computing. e-Science 2013: 27-34
[c11]
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Samuel Schlachter, Stephen Herbein, Michela Taufer, Shuching Ou, Sandeep Patel, Jeremy S. Logan:
Efficient SDS Simulations on Multi-GPU Nodes of XSEDE High-End Clusters. e-Science 2013: 116-123
[c10]
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Qing Liu, Norbert Podhorszki, Jeremy Logan, Scott Klasky:
Runtime I/O Re-Routing + Throttling on HPC Storage. HotStorage 2013
[c9]
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Yuan Tian, Zhuo Liu, Scott Klasky, Bin Wang, Hasan Abbasi, Shujia Zhou, Norbert Podhorszki, Tom Clune, Jeremy Logan, Weikuan Yu:
A lightweight I/O scheme to facilitate spatial and temporal queries of scientific data analytics. MSST 2013: 1-10
[c8]
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  - conf/xsede/SlawinskaCWBZLLKK13
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Magdalena Slawiñska, Michael Clark, Matthew Wolf, Tanja Bode, Hongbo Zou, Pablo Laguna, Jeremy Logan, Matthew Kinsey, Scott Klasky:
A Maya use case: adaptable scientific workflows with ADIOS for general relativistic astrophysics. XSEDE 2013: 54:1-54:8
2012
[c7]
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Jeremy Logan, Scott Klasky, Hasan Abbasi, Qing Liu, George Ostrouchov, Manish Parashar, Norbert Podhorszki, Yuan Tian, Matthew Wolf:
Understanding I/O Performance Using I/O Skeletal Applications. Euro-Par 2012: 77-88
2011
[c6]
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Jeremy Logan, Scott Klasky, Jay F. Lofstead, Hasan Abbasi, Stéphane Ethier, Ray W. Grout, Seung-Hoe Ku, Qing Liu, Xiaosong Ma, Manish Parashar, Norbert Podhorszki, Karsten Schwan, Matthew Wolf:
Skel: Generative Software for Producing Skeletal I/O Applications. e-Science Workshops 2011: 191-198
[c5]
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Jeremy Logan, Phillip M. Dickens:
Interval Based I/O: A New Approach to Providing High Performance Parallel I/O. ICPP Workshops 2011: 289-297
2010
[j1]
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  - journals/concurrency/DickensL10
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Phillip M. Dickens, Jeremy Logan:
A high performance implementation of MPI-IO for a Lustre file system environment. Concurr. Comput. Pract. Exp. 22(11): 1433-1449 (2010)

2000 – 2009

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2009
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Phillip M. Dickens, Jeremy Logan:
Y-lib: a user level library to increase the performance of MPI-IO in a lustre file system environment. HPDC 2009: 31-38
2008
[c3]
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Jeremy Logan, Phillip M. Dickens:
Towards an understanding of the performance of MPI-IO in Lustre file systems. CLUSTER 2008: 330-335
[c2]
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  - conf/otm/DickensL08
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Phillip M. Dickens, Jeremy Logan:
Towards a High Performance Implementation of MPI-IO on the Lustre File System. OTM Conferences (1) 2008: 870-885
2003
[c1]
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  - conf/dbpl/AlagicL03
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Suad Alagic, Jeremy Logan:
Consistency of Java Transactions. DBPL 2003: 71-89

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