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Nagiza F. Samatova
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2020 – today
- 2022
- [j35]Yifan Zhao
, Xian Yang
Predictive models with end user preference. Stat. Anal. Data Min. 15(1): 69-82 (2022) - 2020
- [j34]Sergey V. Meleshko
Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates. Commun. Nonlinear Sci. Numer. Simul. 90: 105337 (2020)
2010 – 2019
- 2018
- [c102]Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova:
An Interpretable Generative Adversarial Approach to Classification of Latent Entity Relations in Unstructured Sentences. AAAI 2018: 5181-5188 - [c101]Shiou Tian Hsu, Mandar S. Chaudhary, Nagiza F. Samatova:
Multilevel Heuristics for Rationale-Based Entity Relation Classification in Sentences. COLING 2018: 1145-1155 - [c100]Ruixin Yang
An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting. ICDM 2018: 104-118 - [c99]Mandar S. Chaudhary, Nagiza F. Samatova:
Causal Relationship Prediction with Continuous Additive Noise Models. CD@KDD 2018: 66-81 - 2017
- [j33]Wenbin Chen, William Hendrix, Nagiza F. Samatova:
The Application of the Weighted k-Partite Graph Problem to the Multiple Alignment for Metabolic Pathways. J. Comput. Biol. 24(12): 1195-1211 (2017) - [j32]Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach
Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data. IEEE Trans. Knowl. Data Eng. 29(10): 2318-2331 (2017) - [c98]Ruixin Yang
An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting. ADMA 2017: 595-607 - [c97]Paul Jones, Dakota Medd, Sreekanth Ramakrishnan, Rajat Shah, Joann Keyton
Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots. BigDataService 2017: 17-22 - [c96]Mingyang Xu, Ruixin Yang
Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model. CICLing (2) 2017: 195-210 - [c95]Changsung Moon, Paul Jones, Nagiza F. Samatova:
Learning Entity Type Embeddings for Knowledge Graph Completion. CIKM 2017: 2215-2218 - [c94]Stephen Ranshous, Mandar S. Chaudhary, Nagiza F. Samatova:
Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing. COMPLEX NETWORKS 2017: 105-116 - [c93]Mandar S. Chaudhary, Stephen Ranshous, Nagiza F. Samatova:
A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery. COMPLEX NETWORKS 2017: 253-264 - [c92]Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova:
A Hybrid CNN-RNN Alignment Model for Phrase-Aware Sentence Classification. EACL (2) 2017: 443-449 - [c91]Stephen Ranshous, Cliff A. Joslyn
Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph. Financial Cryptography Workshops 2017: 248-263 - [c90]Ruixin Yang
Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model. ICNC-FSKD 2017: 1859-1866 - [c89]Paul Jones, Shivani Sharma, Changsung Moon, Nagiza F. Samatova:
A Network-Fusion Guided Dashboard Interface for Task-Centric Document Curation. IUI 2017: 481-491 - [c88]Changsung Moon, Steve Harenberg, John Slankas, Nagiza F. Samatova:
Learning Contextual Embeddings for Knowledge Graph Completion. PACIS 2017: 248 - [c87]Mingyang Xu, Ruixin Yang
A Lifelong Learning Topic Model Structured Using Latent Embeddings. ICSC 2017: 260-261 - [c86]Steve Harenberg, Mandar S. Chaudhary, Nagiza F. Samatova:
Mining Persistent and Discriminative Communities in Graph Ensembles. SSDBM 2017: 28:1-28:6 - [c85]Mingyang Xu, Ruixin Yang
Leveraging External Knowledge for Phrase-Based Topic Modeling. TAAI 2017: 29-32 - 2016
- [j31]Wenbin Chen, Nagiza F. Samatova, Matthias F. Stallmann
On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems. Theor. Comput. Sci. 609: 434-442 (2016) - [c84]Gonzalo A. Bello, Steve Harenberg, Abhishek Agrawal, Nagiza F. Samatova:
Community Detection in Dynamic Attributed Graphs. ADMA 2016: 329-344 - [c83]Mandar S. Chaudhary, Doel L. Gonzalez II, Gonzalo A. Bello, Michael P. Angus, Dhara Desai, Steve Harenberg, P. Murali Doraiswamy, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Causality-Guided Feature Selection. ADMA 2016: 391-405 - [c82]Steve Harenberg, Ramona G. Seay, Gonzalo A. Bello, Rada Chirkova, P. Murali Doraiswamy, Nagiza F. Samatova:
Knowledge-Guided Maximal Clique Enumeration. ADMA 2016: 604-618 - [c81]Wenzhao Zhang, Houjun Tang, Stephen Ranshous, Surendra Byna
Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications. IEEE BigData 2016: 1359-1366 - [c80]Wenzhao Zhang, Houjun Tang
AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications. CCGrid 2016: 116-125 - [c79]Houjun Tang
Usage Pattern-Driven Dynamic Data Layout Reorganization. CCGrid 2016: 356-365 - [c78]Houjun Tang
In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses. ICPP 2016: 406-415 - [c77]Changsung Moon, Dakota Medd, Paul Jones, Steve Harenberg, William Oxbury, Nagiza F. Samatova:
Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models. SDM 2016: 90-98 - [c76]Stephen Ranshous, Steve Harenberg, Kshitij Sharma, Nagiza F. Samatova:
A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations. SDM 2016: 189-197 - [i1]Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar:
Theory-guided Data Science: A New Paradigm for Scientific Discovery. CoRR abs/1612.08544 (2016) - 2015
- [j30]Wenbin Chen
An efficient algorithm for pairwise local alignment of protein interaction networks. J. Bioinform. Comput. Biol. 13(2): 1550003:1-1550003:14 (2015) - [c75]Xiaocheng Zou, Kesheng Wu
Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data. CCGRID 2015: 302-312 - [c74]Wenzhao Zhang, Houjun Tang
Exploring Memory Hierarchy to Improve Scientific Data Read Performance. CLUSTER 2015: 66-69 - [c73]Gonzalo A. Bello, Michael P. Angus, Navya Pedemane, Jitendra K. Harlalka, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Response-Guided Community Detection: Application to Climate Index Discovery. ECML/PKDD (2) 2015: 736-751 - [c72]David A. Boyuka II, Houjun Tang
The hyperdyadic index and generalized indexing and query with PIQUE. SSDBM 2015: 20:1-20:12 - 2014
- [j29]Sriram Lakshminarasimhan, Xiaocheng Zou, David A. Boyuka II, Saurabh V. Pendse, John Jenkins, Venkatram Vishwanath, Michael E. Papka
DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance. Clust. Comput. 17(4): 1101-1119 (2014) - [j28]James H. Faghmous, Arindam Banerjee, Shashi Shekhar, Michael S. Steinbach
Theory-Guided Data Science for Climate Change. Computer 47(11): 74-78 (2014) - [j27]Qing Liu
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. 26(7): 1453-1473 (2014) - [j26]Wenbin Chen
Solving the maximum duo-preservation string mapping problem with linear programming. Theor. Comput. Sci. 530: 1-11 (2014) - [j25]John Jenkins, James Dinan, Pavan Balaji, Tom Peterka, Nagiza F. Samatova, Rajeev Thakur
Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data. IEEE Trans. Parallel Distributed Syst. 25(10): 2627-2637 (2014) - [c71]David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel
Transparent in Situ Data Transformations in ADIOS. CCGRID 2014: 256-266 - [c70]Houjun Tang
Improving Read Performance with Online Access Pattern Analysis and Prefetching. Euro-Par 2014: 246-257 - [c69]Xiaocheng Zou, Sriram Lakshminarasimhan, David A. Boyuka II, Stephen Ranshous, Houjun Tang
Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes. Euro-Par 2014: 668-679 - [c68]Steve Harenberg, Ramona G. Seay, Stephen Ranshous, Kanchana Padmanabhan, Jitendra K. Harlalka, Eric R. Schendel
Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations. SDM 2014: 1010-1018 - [c67]John Jenkins, Xiaocheng Zou, Houjun Tang
RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication. ISC 2014: 296-313 - 2013
- [j24]Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Seung-Hoe Ku
ISABELA for effective in situ compression of scientific data. Concurr. Comput. Pract. Exp. 25(4): 524-540 (2013) - [j23]Zhengzhang Chen
Discovery of extreme events-related communities in contrasting groups of physical system networks. Data Min. Knowl. Discov. 27(2): 225-258 (2013) - [j22]Jaya Kawale, Stefan Liess
A graph-based approach to find teleconnections in climate data. Stat. Anal. Data Min. 6(3): 158-179 (2013) - [j21]John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, David A. Boyuka II, Eric R. Schendel
ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying. Trans. Large Scale Data Knowl. Centered Syst. 10: 95-114 (2013) - [c66]Zhenhuan Gong, David A. Boyuka II, Xiaocheng Zou, Qing Liu, Norbert Podhorszki, Scott Klasky, Xiaosong Ma, Nagiza F. Samatova:
PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns. CCGRID 2013: 343-351 - [c65]Eric R. Schendel
A Generic High-Performance Method for Deinterleaving Scientific Data. Euro-Par 2013: 571-582 - [c64]Sriram Lakshminarasimhan, David A. Boyuka II, Saurabh V. Pendse, Xiaocheng Zou, John Jenkins, Venkatram Vishwanath, Michael E. Papka
Scalable in situ scientific data encoding for analytical query processing. HPDC 2013: 1-12 - [c63]Doel L. Gonzalez, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus, Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships. ICDM 2013: 1055-1060 - [c62]Zhengzhang Chen, Yusheng Xie, Yu Cheng, Kunpeng Zhang, Ankit Agrawal, Wei-keng Liao, Nagiza F. Samatova, Alok N. Choudhary:
Forecast Oriented Classification of Spatio-Temporal Extreme Events. IJCAI 2013: 2952-2954 - [c61]Zhengzhang Chen, Alok N. Choudhary, John Jenkins, Vipin Kumar, Anatoli V. Melechko, Jinfeng Rao, Nagiza F. Samatova, Fredrick H. M. Semazzi:
Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships. SDM 2013: 494-502 - 2012
- [j20]Zhengzhang Chen
Spice: discovery of phenotype-determining component interplays. BMC Syst. Biol. 6: 40 (2012) - [j19]Zhengzhang Chen
Community-based anomaly detection in evolutionary networks. J. Intell. Inf. Syst. 39(1): 59-85 (2012) - [j18]Matthew C. Schmidt, Andrea M. Rocha
NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems. PLoS Comput. Biol. 8(5) (2012) - [c60]Neil Shah, Eric R. Schendel
Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility. CLUSTER 2012: 209-219 - [c59]John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur
Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments. CLUSTER 2012: 468-476 - [c58]John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel
Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying. DEXA (2) 2012: 16-30 - [c57]Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao
On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions. IGCC 2012: 1-6 - [c56]Eric R. Schendel
ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization. HPDC 2012: 61-72 - [c55]Eric R. Schendel
ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression. ICDE 2012: 138-149 - [c54]Doel L. Gonzalez, Zhengzhang Chen
Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis. ICDM Workshops 2012: 781-788 - [c53]Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova:
MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns. ICPP 2012: 239-248 - [c52]Zhenhuan Gong, Sriram Lakshminarasimhan, John Jenkins, Hemanth Kolla
Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data. IPDPS 2012: 873-884 - [c51]John Jenkins, Eric R. Schendel
Byte-precision level of detail processing for variable precision analytics. SC 2012: 48 - [c50]Saurabh V. Pendse, Isaac K. Tetteh, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall. SDM 2012: 35-46 - 2011
- [j17]Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Zhengzhang Chen
Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules. BMC Bioinform. 12: 440 (2011) - [j16]William Hendrix, Andrea M. Rocha, Kanchana Padmanabhan, Alok N. Choudhary, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova:
DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules. BMC Syst. Biol. 5: 172 (2011) - [j15]Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova:
On the parameterized complexity of the Multi-MCT and Multi-MCST problems. J. Comb. Optim. 21(2): 151-158 (2011) - [j14]Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath
Transparent runtime parallelization of the R scripting language. J. Parallel Distributed Comput. 71(2): 157-168 (2011) - [j13]Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova:
Coordinating Computation and I/O in Massively Parallel Sequence Search. IEEE Trans. Parallel Distributed Syst. 22(4): 529-543 (2011) - [c49]Kevin A. Wilson, Andrea M. Rocha, Kanchana Padmanabhan, Kuangyu Wang, Zhengzhang Chen
Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms. BIBM 2011: 443-449 - [c48]Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi, Peter K. Snyder, Vipin Kumar:
Data Guided Discovery of Dynamic Climate Dipoles. CIDU 2011: 30-44 - [c47]Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova:
Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data. Euro-Par (1) 2011: 366-379 - [c46]John Jenkins, Isha Arkatkar, John D. Owens, Alok N. Choudhary, Nagiza F. Samatova:
Lessons Learned from Exploring the Backtracking Paradigm on the GPU. Euro-Par (2) 2011: 425-437 - [c45]Ye Jin, Sriram Lakshminarasimhan, Neil Shah, Zhenhuan Gong, Choong-Seock Chang
S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy. ICDM 2011: 290-299 - [c44]Tatdow Pansombut
Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems. IJCAI 2011: 1439-1445 - [c43]Huseyin Sencan, Zhengzhang Chen
Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction. IJCAI 2011: 1478-1484 - [c42]William Hendrix, Tatiana V. Karpinets, Byung-Hoon Park, Eric R. Schendel
Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data. IPDPS Workshops 2011: 512-522 - [c41]Sriram Lakshminarasimhan, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stéphane Ethier, Jackie Chen, Choong-Seock Chang
ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data. SC 2011: 31:1-31:11 - 2010
- [j12]Tatiana V. Karpinets, Margaret F. Romine
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010) - [j11]Chongle Pan
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinform. 11: 118 (2010) - [j10]William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova:
Theoretical underpinnings for maximal clique enumeration on perturbed graphs. Theor. Comput. Sci. 411(26-28): 2520-2536 (2010) - [c40]Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova:
PackPlay: Mining Semantic Data in Collaborative Games. Linguistic Annotation Workshop 2010: 227-234 - [c39]William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova:
Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. BIOCOMP 2010: 17-23 - [c38]Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova:
Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns. BIOCOMP 2010: 178-184 - [c37]Zhengzhang Chen
Detecting and Tracking Community Dynamics in Evolutionary Networks. ICDM Workshops 2010: 318-327 - [c36]Wenbin Chen, Andrea M. Rocha, William Hendrix, Matthew C. Schmidt, Nagiza F. Samatova:
The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction. ICDM Workshops 2010: 669-678 - [c35]Tatdow Pansombut, Brent E. Harrison, Dennis R. Bahler, Nagiza F. Samatova:
Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection. IKE 2010: 49-56
2000 – 2009
- 2009
- [j9]Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park:
A scalable, parallel algorithm for maximal clique enumeration. J. Parallel Distributed Comput. 69(4): 417-428 (2009) - [j8]Paul Breimyer, Nathan David Green
BioDEAL: community generation of biological annotations. BMC Medical Informatics Decis. Mak. 9(S-1): S5 (2009) - [j7]Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova:
On parameterized complexity of the Multi-MCS problem. Theor. Comput. Sci. 410(21-23): 2024-2032 (2009) - [c34]Matthew C. Schmidt, Nagiza F. Samatova:
An Algorithm for the Discovery of Phenotype Related Metabolic Pathways. BIBM 2009: 60-65 - [c33]Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova:
A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks. BIOCOMP 2009: 816-821 - [c32]Patricia Brent, Nathan David Green, Paul Breimyer, Ramya Krishnamurthy, Nagiza F. Samatova:
Systematic Evaluation of Convergence Criteria in Iterative Training for NLP. FLAIRS 2009 - [c31]Paul Breimyer, Guruprasad Kora, William Hendrix, Neil Shah, Nagiza F. Samatova:
PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments. IADIS AC (2) 2009: 28-32 - [c30]Paul Breimyer, Guruprasad Kora, Nagiza F. Samatova:
Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey. IKE 2009: 615-621 - [c29]Paul Breimyer, William Hendrix, Guruprasad Kora, Nagiza F. Samatova:
pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R. IKE 2009: 667-673 - [c28]Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer:
Incremental All Pairs Similarity Search for Varying Similarity Thresholds with Reduced I/O Overhead. IKE 2009: 687-693 - [c27]Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer:
Incremental all pairs similarity search for varying similarity thresholds. SNAKDD 2009: 1 - [c26]William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova:
On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs. KDD Workshop on Knowledge Discovery from Uncertain Data 2009: 48-56 - [c25]Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova:
WebBANC: Building Semantically-Rich Annotated Corpora from Web User Annotations of Minority Languages. NODALIDA 2009: 48-56 - [c24]Wenhong Tian, Nagiza F. Samatova:
Pairwise Alignment of Interaction Networks by Fast Identification of Maximal Conserved Patterns. Pacific Symposium on Biocomputing 2009: 99-110 - [c23]Amit C. Awekar, Nagiza F. Samatova:
Fast Matching for All Pairs Similarity Search. Web Intelligence 2009: 295-300 - [p1]Chandrika Kamath, Nikil Wale, George Karypis
Scientific Data Analysis. Scientific Data Management 2009 - 2008
- [j6]Bing Zhang, Byung-Hoon Park, Tatiana V. Karpinets, Nagiza F. Samatova:
From pull-down data to protein interaction networks and complexes with biological relevance. Bioinform. 24(7): 979-986 (2008) - [c22]Byung-Hoon Park, Nagiza F. Samatova, Rajesh Munavalli, Ramya Krishnamurthy, Houssain Kettani, Al Geist:
Rapid and robust ranking of text documents in a dynamically changing corpus. AICCSA 2008: 149-155 - [c21]Byung-Hoon Park, Matthew C. Schmidt, Kevin Thomas, Tatiana V. Karpinets, Nagiza F. Samatova:
Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems. IPDPS 2008: 1-8 - [c20]Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova:
Adaptive Request Scheduling for Parallel Scientific Web Services. SSDBM 2008: 276-294 - 2007
- [j5]Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova:
Sampling streaming data with replacement. Comput. Stat. Data Anal. 52(2): 750-762 (2007) - [j4]Robert Sisneros, Chad Jones, Jian Huang, Jinzhu Gao, Byung-Hoon Park, Nagiza F. Samatova:
A Multi-Level Cache Model for Run-Time Optimization of Remote Visualization. IEEE Trans. Vis. Comput. Graph. 13(5): 991-1003 (2007) - [c19]Faisal N. Abu-Khzam, Nagiza F. Samatova, Mohamad A. Rizk, Michael A. Langston:
The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover. AICCSA 2007: 367-373 - [c18]Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova:
Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance. BIBM 2007: 223-229 - [c17]Xiaosong Ma, Jiangtian Li, Nagiza F. Samatova:
Automatic Parallelization of Scripting Languages: Toward Transparent Desktop Parallel Computing. IPDPS 2007: 1-6 - [c16]Faisal N. Abu-Khzam, Mohamad A. Rizk, Deema A. Abdallah, Nagiza F. Samatova:
The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms. PPAM 2007: 170-179 - 2006
- [j3]James M. McCollum, Gregory D. Peterson, Chris D. Cox
The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior. Comput. Biol. Chem. 30(1): 39-49 (2006) - [c15]Christopher T. Symons, Nagiza F. Samatova, Ramya Krishnamurthy, Byung-Hoon Park, Tarik Umar, David Buttler
Multi-Criterion Active Learning in Conditional Random Fields. ICTAI 2006: 323-331 - 2005
- [j2]George Ostrouchov, Nagiza F. Samatova:
On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction. IEEE Trans. Pattern Anal. Mach. Intell. 27(8): 1340-1343 (2005) - [c14]Srikanth B. Yoginath, Nagiza F. Samatova, David Bauer, Guruprasad Kora, George Fann, Al Geist:
RScaLAPACK: High-Performance Parallel Statistical Computing with R and ScaLAPACK. PDCS 2005: 61-67 - [c13]W. Henry Suters, Faisal N. Abu-Khzam, Yun Zhang, Christopher T. Symons, Nagiza F. Samatova, Michael A. Langston:
A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem. COCOON 2005: 717-727 - [c12]Brandon Thurmon, James M. McCollum, Gregory D. Peterson, Chris D. Cox, Nagiza F. Samatova, Gary S. Sayler, Michael L. Simpson:
Accelerating Exact Stochastic Simulation Using Reconfigurable Computing. ERSA 2005: 105-111 - [c11]Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova:
Efficient Data Access for Parallel BLAST. IPDPS 2005 - [c10]Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova:
Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. SC 2005: 12 - 2004
- [c9]Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova:
In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity. CSB 2004: 696-697 - [c8]Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova, Al Geist:
Reservoir-Based Random Sampling with Replacement from Data Stream. SDM 2004: 492-496 - 2003
- [c7]Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova:
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features. CSB 2003: 235-243 - [c6]Byung-Hoon Park, George Ostrouchov, Gong-Xin Yu, Al Geist, Andrey Gorin, Nagiza F. Samatova:
Inference of Protein-Protein Interactions by Unlikely Profile Pair. ICDM 2003: 735-738 - [c5]E. Wes Bethel, Greg Abram, John Shalf, Randy Frank, James P. Ahrens, Steven G. Parker, Nagiza F. Samatova, Mark C. Miller:
Interoperability of Visualization Software and Data Models is NOT an Achievable Goal. IEEE Visualization 2003: 607-610 - 2002
- [j1]Nagiza F. Samatova, George Ostrouchov, Al Geist, Anatoli V. Melechko:
RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets. Distributed Parallel Databases 11(2): 157-180 (2002) - [c4]Thomas E. Potok
An Ontology-Based HTML to XML Conversion Using Intelligent Agents. HICSS 2002: 120 - [c3]Nagiza F. Samatova, Al Geist, George Ostrouchov, Anatoli V. Melechko:
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways. IPDPS 2002 - [c2]Faisal N. Abu-Khzam, Nagiza F. Samatova, George Ostrouchov, Michael A. Langston, Al Geist:
Distributed Dimension Reduction Algorithms for Widely Dispersed Data. IASTED PDCS 2002: 167-174 - 2000
- [c1]Thomas E. Potok, Nenad Ivezic, Nagiza F. Samatova:
Agent-based Architecture for Flexible Lean Cell Design, Analysis and Evaluation. DIISM 2000: 181-188
Coauthor Index
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