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Viacheslav Fofanov
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2010 – 2019
- 2018
- [j8]Tara N. Furstenau
, Jill H. Cocking, Jason W. Sahl, Viacheslav Fofanov:
Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites. BMC Bioinform. 19(1): 222:1-222:13 (2018) - 2010
- [j7]Drew H. Bryant, Mark Moll
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinform. 11: 242 (2010)
2000 – 2009
- 2009
- [j6]Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov:
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinform. 25(18): 2438-2439 (2009) - 2008
- [j5]David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. BMC Bioinform. 9 (2008) - 2007
- [j4]Chris Reed, Viacheslav Fofanov, Catherine Putonti
Effect of the mutation rate and background size on the quality of pathogen identification. Bioinform. 23(20): 2665-2671 (2007) - [j3]Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction. J. Bioinform. Comput. Biol. 5(2a): 353-382 (2007) - [j2]Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs. J. Comput. Biol. 14(6): 791-816 (2007) - [c3]Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov:
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP 2007: 760-766 - 2006
- [c2]Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. RECOMB 2006: 500-515 - 2005
- [c1]Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. Pacific Symposium on Biocomputing 2005 - 2004
- [j1]Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt:
How independent are the appearances of n-mers in different genomes? Bioinform. 20(15): 2421-2428 (2004)
Coauthor Index
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