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Boris Lenhard
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2020 – today
- 2023
- [j25]Sarvesh Nikumbh
, Boris Lenhard
Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation. PLoS Comput. Biol. 19(11) (2023) - 2022
- [j24]Jaime Abraham Castro-Mondragón
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 50(D1): 165-173 (2022) - 2020
- [j23]Oriol Fornes
JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 48(Database-Issue): D87-D92 (2020)
2010 – 2019
- 2019
- [j22]Alexander J. Nash
A novel measure of non-coding genome conservation identifies genomic regulatory blocks within primates. Bioinform. 35(14): 2354-2361 (2019) - [j21]Ge Tan
CNEr: A toolkit for exploring extreme noncoding conservation. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j20]Aziz Khan
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46(Database-Issue): D1284 (2018) - [j19]Aziz Khan
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46(Database-Issue): D260-D266 (2018) - 2016
- [j18]Ge Tan, Boris Lenhard
TFBSTools: an R/bioconductor package for transcription factor binding site analysis. Bioinform. 32(10): 1555-1556 (2016) - [j17]Anthony Mathelier
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 44(Database-Issue): 110-115 (2016) - 2014
- [j16]Anthony Mathelier
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Res. 42(Database-Issue): 142-147 (2014) - [j15]Vanja Haberle
Two independent transcription initiation codes overlap on vertebrate core promoters. Nat. 507(7492): 381-385 (2014) - [j14]The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva
A promoter-level mammalian expression atlas. Nat. 507(7493): 462-470 (2014) - 2013
- [j13]Gemma B. Danks
OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Res. 41(Database-Issue): 845-853 (2013) - 2010
- [j12]Xianjun Dong
Translog, a web browser for studying the expression divergence of homologous genes. BMC Bioinform. 11(S-1): 59 (2010) - [j11]Elodie Portales-Casamar
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res. 38(Database-Issue): 105-110 (2010)
2000 – 2009
- 2008
- [j10]Jan Christian Bryne, Eivind Valen
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. 36(Database-Issue): 102-106 (2008) - [j9]Malin C. Andersen, Pär G. Engström
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation. PLoS Comput. Biol. 4(1) (2008) - 2007
- [j8]Ken C. Pang
RNAdb 2.0 - an expanded database of mammalian non-coding RNAs. Nucleic Acids Res. 35(Database-Issue): 178-182 (2007) - 2006
- [j7]Dominique Vlieghe, Albin Sandelin
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. Nucleic Acids Res. 34(Database-Issue): 95-97 (2006) - 2005
- [j6]Ken C. Pang
RNAdb - a comprehensive mammalian noncoding RNA database. Nucleic Acids Res. 33(Database-Issue): 125-130 (2005) - 2004
- [j5]Albin Sandelin
JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32(Database-Issue): 91-94 (2004) - [j4]D. Fredman, G. Munns, Daniel Rios, F. Sjöholm, Marianne Siegfried, Boris Lenhard
HGVbase: a curated resource describing human DNA variation and phenotype relationships. Nucleic Acids Res. 32(Database-Issue): 516-519 (2004) - [j3]Albin Sandelin
ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res. 32(Web-Server-Issue): 249-252 (2004) - [j2]Johan Geijer, Boris Lenhard
Grid Computing For The Analysis Of Regulatory Elements In Co-Regulated Sets Of Genes. Parallel Process. Lett. 14(2): 137-150 (2004) - 2002
- [j1]Boris Lenhard
TFBS: Computational framework for transcription factor binding site analysis. Bioinform. 18(8): 1135-1136 (2002)
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