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Hongzhan Huang
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2020 – today
- 2024
- [c12]Pei Wang, Hongzhan Huang, Xiaotong Luo, Yanyun Qu:
Data-Free Learning for Lightweight Multi-Weather Image Restoration. ISCAS 2024: 1-5 - 2023
- [j42]Elisabeth Coudert
, Sebastien Gehant
Annotation of biologically relevant ligands in UniProtKB using ChEBI. Bioinform. 39(1) (2023) - [c11]Fangchen Ye
Hardware-friendly Scalable Image Super Resolution with Progressive Structured Sparsity. ACM Multimedia 2023: 9061-9069 - 2021
- [j41]Alistair MacDougall, Vladimir Volynkin, Rabie Saidi, Diego Poggioli, Hermann Zellner, Emma Hatton-Ellis, Vishal Joshi, Claire O'Donovan
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. Bioinform. 36(22-23): 5562 (2021) - [j40]Alex Bateman
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021)
2010 – 2019
- 2019
- [j39]Chuming Chen
PIRSitePredict for protein functional site prediction using position-specific rules. Database J. Biol. Databases Curation 2019: baz026 (2019) - [j38]Alex L. Mitchell
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Res. 47(Database-Issue): D351-D360 (2019) - 2018
- [j37]Hongzhan Huang, Cecilia N. Arighi
iPTMnet: an integrated resource for protein post-translational modification network discovery. Nucleic Acids Res. 46(Database-Issue): D542-D550 (2018) - [j36]Atul Kakrana
iSyTE 2.0: a database for expression-based gene discovery in the eye. Nucleic Acids Res. 46(Database-Issue): D875-D885 (2018) - [c10]Chuming Chen
Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine. BCB 2018: 542 - 2017
- [j35]Robert D. Finn, Teresa K. Attwood
InterPro in 2017 - beyond protein family and domain annotations. Nucleic Acids Res. 45(Database-Issue): D190-D199 (2017) - [j34]Darren A. Natale
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Res. 45(Database-Issue): D339-D346 (2017) - 2016
- [j33]Chuming Chen
Computational clustering for viral reference proteomes. Bioinform. 32(13): 2041-2043 (2016) - [c9]Karen E. Ross, Darren A. Natale, Cecilia N. Arighi, Sheng-Chih Chen, Hongzhan Huang, Gang Li, Jia Ren, Michael Wang, K. Vijay-Shanker, Cathy H. Wu:
Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology. ICBO/BioCreative 2016 - 2015
- [j32]Baris E. Suzek
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinform. 31(6): 926-932 (2015) - [j31]Alex L. Mitchell
The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43(Database-Issue): 213-221 (2015) - 2014
- [j30]Manabu Torii
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information. Database J. Biol. Databases Curation 2014 (2014) - [j29]Darren A. Natale
Protein Ontology: a controlled structured network of protein entities. Nucleic Acids Res. 42(Database-Issue): 415-421 (2014) - [j28]Chuming Chen
Software for pre-processing Illumina next-generation sequencing short read sequences. Source Code Biol. Medicine 9: 8 (2014) - [c8]Tianchuan Du, Alvaro J. González, Qinghua Wang, Hongzhan Huang, Li Liao, Cathy H. Wu
DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions. BCB 2014: 641-642 - 2013
- [j27]Karen Ross, Cecilia N. Arighi
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint. Database J. Biol. Databases Curation 2013 (2013) - [j26]Chuming Chen
A fast Peptide Match service for UniProt Knowledgebase. Bioinform. 29(21): 2808-2809 (2013) - [j25]Qinghua Wang, Keerthi Venkataramanan
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress. BMC Syst. Biol. 7: 120 (2013) - [j24]Luis D. Lopez, Jingyi Yu, Cecilia N. Arighi
A framework for biomedical figure segmentation towards image-based document retrieval. BMC Syst. Biol. 7(S-4): S8 (2013) - [c7]Erin L. Crowgey, Chuming Chen, Shawn W. Polson, Hongzhan Huang, Cathy H. Wu:
An Integrated Approach for Interpretation of Clinical NGS Genomic Variant Data. AMIA 2013 - [c6]Luis D. Lopez, Jingyi Yu, Cecilia N. Arighi, Manabu Torii
An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature. BCB 2013: 412 - [c5]Chuming Chen
ngsShoRT: A Software for Pre-processing Illumina Short Read Sequences for De Novo Genome Assembly. BCB 2013: 706 - 2012
- [j23]Qinghua Wang, Cecilia N. Arighi
Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees. Database J. Biol. Databases Curation 2012 (2012) - [c4]Xia Bi, Hongzhan Huang, Sherri Matis-Mitchell, Peter B. McGarvey, Manabu Torii
Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia. BIBM 2012: 1-4 - [c3]Luis D. Lopez, Jingyi Yu, Catalina O. Tudor, Cecilia N. Arighi, Hongzhan Huang, K. Vijay-Shanker, Cathy H. Wu
Robust segmentation of biomedical figures for image-based document retrieval. BIBM 2012: 1-6 - 2011
- [j22]Hongzhan Huang, Peter B. McGarvey
A comprehensive protein-centric ID mapping service for molecular data integration. Bioinform. 27(8): 1190-1191 (2011) - [j21]Darren A. Natale
The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Res. 39(Database-Issue): 539-545 (2011) - [c2]Luis D. Lopez, Jingyi Yu, Cecilia N. Arighi, Hongzhan Huang, Hagit Shatkay, Cathy H. Wu
An Automatic System for Extracting Figures and Captions in Biomedical PDF Documents. BIBM 2011: 578-581 - [c1]Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Natalia V. Roberts, Alan Ruttenberg, Barry Smith, Jian Zhang, Cathy H. Wu:
Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. ICBO 2011 - 2010
- [j20]Chuming Chen
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. Adv. Bioinformatics 2010: 423589:1-423589:19 (2010)
2000 – 2009
- 2008
- [j19]C. Zhang, Oswald Crasta, Stephen A. Cammer, Rebecca Will, Ron Kenyon, Daniel E. Sullivan, Q. Yu, W. Sun, R. Jha, D. Liu, Tian Xue, Y. Zhang, M. Moore, Peter B. McGarvey, Hongzhan Huang, Yongxing Chen, J. Zhang, Raja Mazumder
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Res. 36(Database-Issue): 884-891 (2008) - 2007
- [j18]Baris E. Suzek
UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinform. 23(10): 1282-1288 (2007) - 2006
- [j17]Cathy H. Wu
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34(Database-Issue): 187-191 (2006) - 2005
- [j16]Amos Bairoch
The Universal Protein Resource (UniProt). Nucleic Acids Res. 33(Database-Issue): 154-159 (2005) - 2004
- [j15]Cathy H. Wu
The iProClass integrated database for protein functional analysis. Comput. Biol. Chem. 28(1): 87-96 (2004) - [j14]Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu:
The PIR integrated protein databases and data retrieval system. Data Sci. J. 3: 163-174 (2004) - [j13]Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder
PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 32(Database-Issue): 112-114 (2004) - [j12]Rolf Apweiler
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32(Database-Issue): 115-119 (2004) - 2003
- [j11]Cathy H. Wu
Protein family classification and functional annotation. Comput. Biol. Chem. 27(1): 37-47 (2003) - [j10]Cathy H. Wu
The Protein Information Resource. Nucleic Acids Res. 31(1): 345-347 (2003) - [j9]Hongzhan Huang, Winona C. Barker, Yongxing Chen, Cathy H. Wu
iProClass: an integrated database of protein family, function and structure information. Nucleic Acids Res. 31(1): 390-392 (2003) - 2002
- [j8]Cathy H. Wu
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res. 30(1): 35-37 (2002) - 2001
- [j7]Winona C. Barker, John S. Garavelli
Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Res. 29(1): 29-32 (2001) - [j6]Cathy H. Wu
iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Res. 29(1): 52-54 (2001) - 2000
- [j5]Peter B. McGarvey
PIR: a new resource for bioinformatics. Bioinform. 16(3): 290-291 (2000) - [j4]Winona C. Barker, John S. Garavelli
The Protein Information Resource (PIR). Nucleic Acids Res. 28(1): 41-44 (2000) - [j3]Hongzhan Huang, Chunlin Xiao, Cathy H. Wu
ProClass protein family database. Nucleic Acids Res. 28(1): 273-276 (2000)
1990 – 1999
- 1999
- [j2]Cathy H. Wu, Hongzhan Huang, Jerry McLarty:
Gene Family Identification Network Design for Protein Sequence Analysis. Int. J. Artif. Intell. Tools 8(4): 419-432 (1999) - [j1]Cathy H. Wu
ProClass Protein Family Database. Nucleic Acids Res. 27(1): 272-274 (1999)
Coauthor Index
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