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In Silico Biology, Volume 2
Volume 2, Number 1, 2001
- Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, Roland J. Siezen:
EXProt - a database for EXPerimentally verified Protein functions. 1-4 - Tetsuo Nishikawa, Toshio Ota, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Ai Wakamatsu, Masashi Ozawa, Yutaka Suzuki, Sumio Sugano, Takao Isogai:
Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries. 5-18 - Masami Ikeda, Masafumi Arai, Demelo Madrazo Lao, Toshio Shimizu:
Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topology . 19-33
Volume 2, Number 2, 2002
- Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz:
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). 35-36 - Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik:
BioDataServer: A SQL-based service for the online integration of life science data. 37-57 - Falk Schreiber:
High quality visualization of biochemical pathways in BioPath. 59-73 - Isabel Rojas, Luca Bernardi, Esther Ratsch, Renate Kania, Ulrike Wittig, Jasmin Saric:
A database system for the analysis of biochemical pathways. 75-86 - Gabriel Moreno-Hagelsieb, Julio Collado-Vides:
Operon conservation from the point of view of Escherichia coli, and inference of functional inter-dependence of gene products from genome context. 87-95 - Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin:
GeneNet database: description and modeling of gene networks. 97-110 - Johannes Jaeger, Brian C. Goodwin:
Cellular oscillators in animal segmentation. 111-123 - Konstantin Kozlov, Ekaterina M. Myasnikova, Andrei Pisarev, Maria Samsonova, John Reinitz:
A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. 125-141 - Patrizio Arrigo, Giovanni Ivaldi, Pasquale Paolo Cardo:
In silico determination of potential antisense targets for human beta-globin variants. 143-150 - Mark Cooper, Scott C. Chapman, Dean W. Podlich, Graeme L. Hammer:
The GP problem: Quantifying gene-to-phenotype relationships. 151-164
Volume 2, Number 3, 2002
- Edgar Wingender:
The German Conference on Bioinformatics 2001. 165-167 - Dietmar Schomburg, Martin Vingron:
Bioinformatics research and education in Germany. 169-171 - Jingchu Luo:
Bioinformatics service, education and research: the EMBnet and CBI. 173-177 - Steffen Schulze-Kremer:
Ontologies for molecular biology and bioinformatics. 179-193 - Oliver Rinner, Burkhard Morgenstern:
AGenDA: Gene prediction by comparative sequence analysis. 195-205 - Änne Glass, Lothar Gierl:
A system architecture for genomic data analysis. 207-211 - Ania Barbasiewicz, Lin Liu, B. Franz Lang, Gertraud Burger:
Building a genome database using an object-oriented approach. 213-217 - Jacob Köhler, Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources. 219-231 - Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov:
Construction of stochastic context trees for genetical texts. 233-247 - Thomas Werner:
Finding and decrypting of promoters contributes to the elucidation of gene function. 249-255 - Evgenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnevsky, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov:
Computer system "Gene Discovery" for promoter structure analysis. 257-262 - Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang:
Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae. 263-273 - Rolf Backofen, N. S. Narayanaswamy, Firas Swidan:
Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. 275-290 - Zhi-Ping Feng:
An overview on predicting the subcellular location of a protein. 291-303 - Karin Wieligmann, Luis Felipe Pineda De Castro, Martin Zacharias:
Molecular dynamics simulations on the free and complexed N-terminal SH2 domain of SHP-2. 305-311 - Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families. 313-324 - Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving fold recognition of protein threading by experimental distance constraints. 325-337 - Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A hypergraph-based method for unification of existing protein structure- and sequence-families. 339-349 - Kerstin Koch, Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer:
Comparing bound and unbound protein structures using energy calculation and rotamer statistics. 351-368 - Rainer Spang, Carrie Blanchette, Harry Zuzan, Jeffrey R. Marks, Joseph Nevins, Mike West:
Prediction and uncertainty in the analysis of gene expression profiles. 369-381 - Martin Dugas, Claudia Schoch, Susanne Schnittger, Alexander Kohlmann, Wolfgang Kern, Torsten Haferlach, Karl Überla:
Integration of clinical and genetic information - from patient data to gene expression analysis. 383-391 - Sabine Dormann, Andreas Deutsch:
Modeling of self-organized avascular tumor growth with cellular automata. 393-406 - Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz:
Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. 407-414 - Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber, Franz-Josef Brandenburg:
The system architecture of the BioPath system. 415-426 - Martin Frank, Andreas Bohne, Thomas Wetter, Claus-Wilhelm von der Lieth:
Knowledge-based approach for the rapid generation of a representative ensemble of N-glycan conformations. 427-439
Volume 2, Number 4, 2002
- Addie Nina Olsen, John Mundy, Karen Skriver:
Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. 441-451 - Maura Cárdenas-García, Jaime Lagunez-Otero, Nikolai A. Korneev:
The application of abstract topology to RAS-related signal transduction pathways. 453-460 - Allen Chong, Guanglan Zhang, Vladimir B. Bajic:
Information and sequence extraction around the 5'-end and translation initiation site of human genes. 461-465 - Jochen Hurlebaus, Arne Buchholz, Wolfgang Alt, Wolfgang Wiechert, Ralf Takors:
MMT - A pathway modeling tool for data from rapid sampling experiments. 467-484 - Demelo Madrazo Lao, Toshikatsu Okuno, Toshio Shimizu:
Evaluating transmembrane topology prediction methods for the effect of signal peptide in topology prediction. 485-494 - German Nudelman, Tamar Tennenbaum, Ramit Mehr, Ron Unger:
PESI - An intelligent system for Prediction of Enzyme - Substrate Interactions based on experimental constraints. 495-505 - Ashwin Sivakumar:
2D Gels and bioinformatics - An eye at the future. 507-510 - Amanda Clare, Ross D. King:
How well do we understand the clusters found in microarray data? 511-522 - Susan B. Davidson, Christian J. Stoeckert Jr.:
In memory of Vadim Aleksandrovich Ratner. 523-524 - Anna Zorzet, Mats G. Gustafsson, Ulf Hammerling:
Prediction of food protein allergenicity: a bioinformatic learning systems approach. 525-534
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