Journal of the American Medical Informatics Association, Volume 25

Volume 25, Number 1, January 2018

Highlights

• 
  Lucila Ohno-Machado:
  Special Focus on Biomedical Data Science. 1

Editorial

• 
  Patricia Flatley Brennan, Michael F. Chiang, Lucila Ohno-Machado:
  Biomedical informatics and data science: evolving fields with significant overlap. 2-3

Research and Applications

• 
  Reem Almugbel, Ling-Hong Hung, Jiaming Hu, Abeer Almutairy, Nicole Ortogero, Yashaswi Tamta, Ka Yee Yeung:
  Reproducible Bioconductor workflows using browser-based interactive notebooks and containers. 4-12

Brief Communication

• 
  Alejandra N. González-Beltrán, John Campbell, Patrick J. Dunn, Diana Guijarro, Sanda Ionescu, Hyeoneui Kim, Jared Lyle, Jeffrey A. Wiser, Susanna-Assunta Sansone, Philippe Rocca-Serra:
  Data discovery with DATS: exemplar adoptions and lessons learned. 13-16

Research and Applications

• 
  Hossein Estiri, Kari A. Stephens, Jeffrey G. Klann, Shawn N. Murphy:
  Exploring completeness in clinical data research networks with DQe-c. 17-24
• 
  Weiyi Xia, Zhiyu Wan, Zhijun Yin, James Gaupp, Yongtai Liu, Ellen Wright Clayton, Murat Kantarcioglu, Yevgeniy Vorobeychik, Bradley A. Malin:
  It's all in the timing: calibrating temporal penalties for biomedical data sharing. 25-31
• 
  Alistair E. W. Johnson, David J. Stone, Leo A. Celi, Tom J. Pollard:
  The MIMIC Code Repository: enabling reproducibility in critical care research. 32-39
• 
  Michelle R. Hribar, Sarah Read-Brown, Isaac H. Goldstein, Leah G. Reznick, Lorinna Lombardi, Mansi Parikh, Winston Chamberlain, Michael F. Chiang:
  Secondary use of electronic health record data for clinical workflow analysis. 40-46
• 
  Suranga Nath Kasthurirathne, Joshua R. Vest, Nir Menachemi, Paul K. Halverson, Shaun J. Grannis:
  Assessing the capacity of social determinants of health data to augment predictive models identifying patients in need of wraparound social services. 47-53
• 
  Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai:
  Enabling phenotypic big data with PheNorm. 54-60
• 
  Cosmin Adrian Bejan, John Angiolillo, Douglas Conway, Robertson Nash, Jana Shirey-Rice, Loren Lipworth-Elliot, Robert M. Cronin, Jill M. Pulley, Sunil Kripalani, Shari Barkin, Kevin B. Johnson, Joshua C. Denny:
  Mining 100 million notes to find homelessness and adverse childhood experiences: 2 case studies of rare and severe social determinants of health in electronic health records. 61-71
• 
  Jiaheng Xie, Xiao Liu, Daniel Dajun Zeng:
  Mining e-cigarette adverse events in social media using Bi-LSTM recurrent neural network with word embedding representation. 72-80

Brief Communications

• 
  Gaurav Trivedi, Phuong Pham, Wendy W. Chapman, Rebecca Hwa, Janyce Wiebe, Harry Hochheiser:
  NLPReViz: an interactive tool for natural language processing on clinical text. 81-87
• 
  Markel Vigo, Lamiece Hassan, William Vance, Caroline Jay, Andrew Brass, Sheena Cruickshank:
  Britain Breathing: using the experience sampling method to collect the seasonal allergy symptoms of a country. 88-92
• 
  Yuan Luo, Yu Cheng, Özlem Uzuner, Peter Szolovits, Justin Starren:
  Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. 93-98

Research and Applications

• 
  Abolfazl Doostparast Torshizi, Linda R. Petzold:
  Graph-based semi-supervised learning with genomic data integration using condition-responsive genes applied to phenotype classification. 99-108

Volume 25, Number 2, February 2018

Highlights

• 
  Lucila Ohno-Machado:
  Informatics systems for health care providers, patients, and families. 110

Research and Applications

• 
  Joseph P. Drozda Jr., James P. Roach, Thomas Forsyth, Paul Helmering, Benjamin Dummitt, James E. Tcheng:
  Constructing the informatics and information technology foundations of a medical device evaluation system: a report from the FDA unique device identifier demonstration. 111-120
• 
  Ronald G. Hauser, Douglas B. Quine, Alex Ryder:
  LabRS: A Rosetta stone for retrospective standardization of clinical laboratory test results. 121-126
• 
  Dawn Heisey-Grove, Hilary K. Wall, Janet S. Wright:
  Electronic clinical quality measure reporting challenges: findings from the Medicare EHR Incentive Program's Controlling High Blood Pressure Measure. 127-134
• 
  Sarah E. Vaala, Joyce M. Lee, Korey K. Hood, Shelagh A. Mulvaney:
  Sharing and helping: predictors of adolescents' willingness to share diabetes personal health information with peers. 135-141
• 
  Rachel P. Berger, Richard A. Saladino, Janet Fromkin, Emily Heineman, Srinivasan Suresh, Tom McGinn:
  Development of an electronic medical record-based child physical abuse alert system. 142-149
• 
  Devon W. Paul, Nigel B. Neely, Meredith Clement, Isaretta L. Riley, Mashael Al-Hegelan, Matthew Phelan, Monica Kraft, David M. Murdoch, Joseph E. Lucas, John Bartlett, Mehri McKellar, Loretta G. Que:
  Development and validation of an electronic medical record (EMR)-based computed phenotype of HIV-1 infection. 150-157
• 
  Fupan Yao, Seyed Ali Madani Tonekaboni, Zhaleh Safikhani, Petr Smirnov, Nehme El-Hachem, Mark Freeman, Venkata Satya Kumar Manem, Benjamin Haibe-Kains:
  Tissue specificity of in vitro drug sensitivity. 158-166
• 
  Gretchen Purcell Jackson, Jamie R. Robinson, Ebone Ingram, Mary Masterman, Catherine Ivory, Diane Holloway, Shilo Anders, Robert M. Cronin:
  A technology-based patient and family engagement consult service for the pediatric hospital setting. 167-174
• 
  Dawn Dowding, Jacqueline A. Merrill, Nicole Onorato, Yolanda Barrón, Robert J. Rosati, David Russell:
  The impact of home care nurses' numeracy and graph literacy on comprehension of visual display information: implications for dashboard design. 175-182

Case Report

• 
  Kevan M. Sternberg, Stacy L. Loeb, David Canes, Laura Donnelly, Mitchell H. Tsai:
  The use of Twitter to facilitate sharing of clinical expertise in urology. 183-186

Brief Communication

• 
  Ethan Larsen, Allan Fong, Christian Wernz, Raj M. Ratwani:
  Implications of electronic health record downtime: an analysis of patient safety event reports. 187-191
• 
  Ronald G. Hauser, Douglas B. Quine, Alex Ryder, Sheldon Campbell:
  Unit conversions between LOINC codes. 192-196
• 
  Sripriya Rajamani, Elizabeth S. Chen, Elizabeth Lindemann, Ranyah Aldekhyyel, Yan Wang, Genevieve B. Melton:
  Representation of occupational information across resources and validation of the occupational data for health model. 197-205

Perspective

• 
  Sarah A. Collins, Patricia C. Dykes, David W. Bates, Brittany Couture, Ronen Rozenblum, Jennifer E. Prey, Kristin O'Reilly, Patricia Q. Bourie, Cindy Dwyer, Ryan Greysen, Jeffery Smith, Michael Gropper, Anuj K. Dalal:
  An informatics research agenda to support patient and family empowerment and engagement in care and recovery during and after hospitalization. 206-209

Review

• 
  Jason Cory Brunson, Reinhard C. Laubenbacher:
  Applications of network analysis to routinely collected health care data: a systematic review. 210-221

Corrigendum

• 
  Corrigendum to: Meaningful use of health information technology and declines in in-hospital adverse drug events. 222

Volume 25, Number 3, March 2018

Highlights

• 
  Lucila Ohno-Machado:
  Clinical research informatics: a growing subspecialization of biomedical informatics. 223

Case Report

• 
  Mark Smith, Lisa M. Lix, Mahmoud Azimaee, Jennifer E. Enns, Justine Orr, Say Hong, Leslie L. Roos:
  Assessing the quality of administrative data for research: a framework from the Manitoba Centre for Health Policy. 224-229

Research and Applications

• 
  Jason A. Walonoski, Mark Kramer, Joseph Nichols, Andre Quina, Chris Moesel, Dylan Hall, Carlton Duffett, Kudakwashe Dube, Thomas Gallagher, Scott McLachlan:
  Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record. 230-238
• 
  Anando Sen, Andrew Goldstein, Shreya Chakrabarti, Ning Shang, Tian Kang, Anil Yaman, Patrick B. Ryan, Chunhua Weng:
  The representativeness of eligible patients in type 2 diabetes trials: a case study using GIST 2.0. 239-247
• 
  Ning Shang, Chunhua Weng, George Hripcsak:
  A conceptual framework for evaluating data suitability for observational studies. 248-258
• 
  Walter S. Campbell, Daniel Karlsson, Daniel J. Vreeman, Audrey Lazenby, Geoffrey Talmon, James R. Campbell:
  A computable pathology report for precision medicine: extending an observables ontology unifying SNOMED CT and LOINC. 259-266
• 
  Sean Peisert, Eli Dart, William Barnett, Edward Balas, James Cuff, Robert L. Grossman, Ari Berman, Anurag Shankar, Brian Tierney:
  The medical science DMZ: a network design pattern for data-intensive medical science. 267-274
• 
  Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti:
  Uncovering exposures responsible for birth season - disease effects: a global study. 275-288

Perspective

• 
  George Hripcsak, David J. Albers:
  High-fidelity phenotyping: richness and freedom from bias. 289-294

Brief Communication

• 
  Gregory B. Rehm, Brooks Kuhn, Jean-Pierre Delplanque, Edward Guo, Monica Lieng, Jimmy Nguyen, Nicholas R. Anderson, Jason Y. Adams:
  Development of a research-oriented system for collecting mechanical ventilator waveform data. 295-299

Research and Applications

• 
  Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
  DataMed - an open source discovery index for finding biomedical datasets. 300-308
• 
  Cole Brokamp, Chris Wolfe, Todd Lingren, John Harley, Patrick B. Ryan:
  Decentralized and reproducible geocoding and characterization of community and environmental exposures for multisite studies. 309-314
• 
  Christine M. O'Keefe, Adrien Ickowicz, Tim Churches, Mark Westcott, Maree O'Sullivan, Atikur R. Khan:
  Assessing privacy risks in population health publications using a checklist-based approach. 315-320
• 
  Shang Gao, Michael T. Young, John X. Qiu, Hong-Jun Yoon, James Blair Christian, Paul A. Fearn, Georgia D. Tourassi, Arvind Ramanathan:
  Hierarchical attention networks for information extraction from cancer pathology reports. 321-330

Brief Communication

• 
  Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu:
  CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines. 331-336

Research and Applications

• 
  Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson:
  User needs analysis and usability assessment of DataMed - a biomedical data discovery index. 337-344
• 
  Jing Huang, Rui Duan, Rebecca A. Hubbard, Yonghui Wu, Jason H. Moore, Hua Xu, Yong Chen:
  PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data. 345-352
• 
  Sunghwan Sohn, Yanshan Wang, Chung-Il Wi, Elizabeth A. Krusemark, Euijung Ryu, Mir H. Ali, Young J. Juhn, Hongfang Liu:
  Clinical documentation variations and NLP system portability: a case study in asthma birth cohorts across institutions. 353-359
• 
  Christopher A. Harle, Elizabeth H. Golembiewski, Kiarash P. Rahmanian, Janice L. Krieger, Dorothy Hagmajer, Arch G. Mainous III, Ray E. Moseley:
  Patient preferences toward an interactive e-consent application for research using electronic health records. 360-368

Volume 25, Number 4, April 2018

Highlights

• 
  Lucila Ohno-Machado:
  Enabling patients to be active participants in healthcare via informatics interventions. 369

Research and Applications

• 
  Lisa V. Grossman, Sung W. Choi, Sarah A. Collins, Patricia C. Dykes, Kevin J. O'Leary, Milisa Rizer, Philip Strong, Po-Yin Yen, David K. Vawdrey:
  Implementation of acute care patient portals: recommendations on utility and use from six early adopters. 370-379

Case Reports

• 
  Juanita I. Fernando, Jennifer Lindley:
  Lessons learned from piloting mHealth informatics practice curriculum into a medical elective. 380-384

Research and Applications

• 
  Willem van der Veen, Patricia M. L. A. van den Bemt, Hans Wouters, David W. Bates, Jos W. R. Twisk, Johan J. de Gier, Katja Taxis, Michiel Duyvendak, Karen Oude Luttikhuis, Johannes J. W. Ros, Erwin C. Vasbinder, Maryam Atrafi, Bjorn Brasse, Iris Mangelaars:
  Association between workarounds and medication administration errors in bar-code-assisted medication administration in hospitals. 385-392
• 
  Rebecca Giguere, William Brown III, Ivan C. Balán, Curtis Dolezal, Titcha Ho, Alan Sheinfil, Mobolaji Ibitoye, Javier R. Lama, Ian McGowan, Ross D. Cranston, Alex Carballo-Diéguez:
  Are participants concerned about privacy and security when using short message service to report product adherence in a rectal microbicide trial? 393-400
• 
  Timothy J. Daskivich, Justin Houman, Garth Fuller, Jeanne T. Black, Hyung L. Kim, Brennan Spiegel:
  Online physician ratings fail to predict actual performance on measures of quality, value, and peer review. 401-407

Brief Communications

• 
  Jennifer L. Wolff, Victoria S. Kim, Suzanne Mintz, Rebecca Stametz, Joan M. Griffin:
  An environmental scan of shared access to patient portals. 408-412

Research and Applications

• 
  Joy L. Lee, Marianne S. Matthias, Nir Menachemi, Richard M. Frankel, Michael Weiner:
  A critical appraisal of guidelines for electronic communication between patients and clinicians: the need to modernize current recommendations. 413-418

Brief Communications

• 
  Michael N. Cantor, Rajan Chandras, Claudia P. Pulgarin:
  FACETS: using open data to measure community social determinants of health. 419-422

Perspective

• 
  Ezequiel B. Ossemane, Troy D. Moon, Martin Chieng Were, Elizabeth Heitman:
  Ethical issues in the use of SMS messaging in HIV care and treatment in low- and middle-income countries: case examples from Mozambique. 423-427

Research and Applications

• 
  Betty Bekemeier, Seungeun Park:
  Development of the PHAST model: generating standard public health services data and evidence for decision-making. 428-434

Case Reports

• 
  Melissa W. McClung, Sarah A. Gumm, Megan E. Bisek, Amber L. Miller, Bryan C. Knepper, Arthur J. Davidson:
  Managing public health data: mobile applications and mass vaccination campaigns. 435-439

Research and Applications

• 
  Traber Davis Giardina, Jessica Baldwin, Daniel T. Nystrom, Dean F. Sittig, Hardeep Singh:
  Patient perceptions of receiving test results via online portals: a mixed-methods study. 440-446
• 
  Adrian G. Dumitrascu, M. Caroline Burton, Nancy L. Dawson, Colleen S. Thomas, Lisa M. Nordan, Hope E. Greig, Duaa I Aljabri, James M. Naessens:
  Patient portal use and hospital outcomes. 447-453

Volume 25, Number 5, May 2018

Highlights

• 
  Lucila Ohno-Machado:
  Clinical decision support: informatics interventions for better patient care. 457

Research and Applications

• 
  Stacy W. Gray, Jeffrey Gagan, Ethan Cerami, Angel M. Cronin, Hajime Uno, Nelly Oliver, Carol Lowenstein, Ruth Lederman, Anna Revette, Aaron Suarez, Charlotte Lee, Jordan Bryan, Lynette Sholl, Eliezer M. Van Allen:
  Interactive or static reports to guide clinical interpretation of cancer genomics. 458-464
• 
  Jan Horsky, Elizabeth A. Drucker, Harley Z. Ramelson:
  Higher accuracy of complex medication reconciliation through improved design of electronic tools. 465-475
• 
  Karen C. Nanji, Diane L. Seger, Sarah P. Slight, Mary G. Amato, Patrick E. Beeler, Qoua L. Her, Olivia Dalleur, Tewodros Eguale, Adrian Wong, Elizabeth R. Silvers, Michael Swerdloff, Salman T. Hussain, Nivethietha Maniam, Julie M. Fiskio, Patricia C. Dykes, David W. Bates:
  Medication-related clinical decision support alert overrides in inpatients. 476-481
• 
  Robyn Tamblyn, Nancy Winslade, Todd C. Lee, Aude Motulsky, Ari Meguerditchian, Melissa Bustillo, Sarah Elsayed, David L. Buckeridge, Isabelle Couture, Christina J. Qian, Teresa Moraga, Allen Huang:
  Improving patient safety and efficiency of medication reconciliation through the development and adoption of a computer-assisted tool with automated electronic integration of population-based community drug data: the RightRx project. 482-495
• 
  Adam Wright, Angela Ai, Joan S. Ash, Jane Wiesen, Thu-Trang T. Hickman, Skye Aaron, Dustin McEvoy, Shane Borkowsky, Pavithra I. Dissanayake, Peter J. Embí, William L. Galanter, Jeremy Harper, Steve Z. Kassakian, Rachel Badovinac Ramoni, Richard Schreiber, Anwar Mohammad Sirajuddin, David W. Bates, Dean F. Sittig:
  Clinical decision support alert malfunctions: analysis and empirically derived taxonomy. 496-506
• 
  Sowmya Varada, Ronilda Lacson, Ali S. Raja, Ivan K. Ip, Louise I. Schneider, David Osterbur, Paul Bain, Nicole Vetrano, Jacqueline Cellini, Carol Mita, Margaret H. Coletti, Julia Whelan, Ramin Khorasani:
  Characteristics of knowledge content in a curated online evidence library. 507-514
• 
  Erin P. Finley, Suyen Schneegans, Claudina Tami, Mary Jo Pugh, Don McGeary, Lauren Penney, Jennifer Sharpe Potter:
  Implementing prescription drug monitoring and other clinical decision support for opioid risk mitigation in a military health care setting: a qualitative feasibility study. 515-522
• 
  Jonathan S. Austrian, Catherine T. Jamin, Glenn R. Doty, Saul Blecker:
  Impact of an emergency department electronic sepsis surveillance system on patient mortality and length of stay. 523-529
• 
  Honghan Wu, Giulia Toti, Katherine I. Morley, Zina M. Ibrahim, Amos Folarin, Richard G. Jackson, Ismail Emre Kartoglu, Asha Agrawal, Clive Stringer, Darren Gale, Genevieve Gorrell, Angus Roberts, Matthew T. M. Broadbent, Robert Stewart, Richard J. B. Dobson:
  SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research. 530-537
• 
  Arianna Dagliati, Lucia Sacchi, Valentina Tibollo, Giulia Cogni, Marsida Teliti, Antonio Martinez-Millana, Vicente Traver, Daniele Segagni, Jorge Posada, Manuel Ottaviano, Giuseppe Fico, María Teresa Arredondo, Pasquale De Cata, Luca Chiovato, Riccardo Bellazzi:
  A dashboard-based system for supporting diabetes care. 538-547
• 
  Ron C. Li, Trit Garg, Tony Cun, Lisa Shieh, Gomathi Krishnan, Daniel Z. Fang, Jonathan H. Chen:
  Impact of problem-based charting on the utilization and accuracy of the electronic problem list. 548-554
• 
  Yizhao Ni, Todd Lingren, Eric S. Hall, Matthew Leonard, Kristin Melton, Eric S. Kirkendall:
  Designing and evaluating an automated system for real-time medication administration error detection in a neonatal intensive care unit. 555-563

Case Report

• 
  Erin G. Stone:
  Unintended adverse consequences of a clinical decision support system: two cases. 564-567

Brief Communications

• 
  Andrew D. Brown, Thomas R. Marotta:
  Using machine learning for sequence-level automated MRI protocol selection in neuroradiology. 568-571
• 
  Dustin McEvoy, Michael L. Barnett, Dean F. Sittig, Skye Aaron, Ateev Mehrotra, Adam Wright:
  Changes in hospital bond ratings after the transition to a new electronic health record. 572-574

Reviews

• 
  Clare L. Tolley, Niamh E. Forde, Katherine L. Coffey, Dean F. Sittig, Joan S. Ash, Andrew K. Husband, David W. Bates, Sarah P. Slight:
  Factors contributing to medication errors made when using computerized order entry in pediatrics: a systematic review. 575-584
• 
  Kristen E. Miller, Danielle Mosby, Muge Capan, Rebecca Kowalski, Raj M. Ratwani, Yaman Noaiseh, Rachel Kraft, Sanford Schwartz, William S. Weintraub, Ryan Arnold:
  Interface, information, interaction: a narrative review of design and functional requirements for clinical decision support. 585-592
• 
  Julian Varghese, Maren Kleine, Sophia Isabella Gessner, Sarah Sandmann, Martin Dugas:
  Effects of computerized decision support system implementations on patient outcomes in inpatient care: a systematic review. 593-602
• 
  Chad M. Hodge, Scott P. Narus:
  Electronic problem lists: a thematic analysis of a systematic literature review to identify aspects critical to success. 603-613

Letter to the Editor

• 
  Daniel J. Vreeman, Swapna Abhyankar, Clement J. McDonald:
  Response to Unit conversions between LOINC codes. 614-615

Corrigenda

• 
  Corrigendum to: Evaluating the reliability, validity, acceptability, and practicality of SMS text messaging as a tool to collect research data: results from the Feeding Your Baby project. 616
• 
  Corrigendum to: The use of Twitter to facilitate sharing of clinical expertise in urology. 617

Volume 25, Number 6, June 2018

Highlights

• 
  Lucila Ohno-Machado:
  Electronic health records and health information exchange. 617

Research and Applications

• 
  Marie Krousel-Wood, Allison B. McCoy, Chad Ahia, Elizabeth W. Holt, Donnalee N. Trapani, Qingyang Luo, Eboni G. Price-Haywood, Eric J. Thomas, Dean F. Sittig, Richard V. Milani:
  Implementing electronic health records (EHRs): health care provider perceptions before and after transition from a local basic EHR to a commercial comprehensive EHR. 618-626
• 
  Oscar O. Agoro, Sarah W. Kibira, Jenny V. Freeman, Hamish S. F. Fraser:
  Barriers to the success of an electronic pharmacovigilance reporting system in Kenya: an evaluation three years post implementation. 627-634
• 
  Cason D. Schmit, Sarah A. Wetter, Bita A. Kash:
  Falling short: how state laws can address health information exchange barriers and enablers. 635-644
• 
  Yuan Luo, Peter Szolovits, Anand Dighe, Jason Baron:
  3D-MICE: integration of cross-sectional and longitudinal imputation for multi-analyte longitudinal clinical data. 645-653
• 
  A Jay Holmgren, Julia Adler-Milstein, Jeffrey McCullough:
  Are all certified EHRs created equal? Assessing the relationship between EHR vendor and hospital meaningful use performance. 654-660
• 
  Foster R. Goss, Kenneth H. Lai, Maxim Topaz, Warren W. Acker, Leigh Kowalski, Joseph M. Plasek, Kimberly G. Blumenthal, Diane L. Seger, Sarah P. Slight, Kin Wah Fung, Frank Y. Chang, David W. Bates, Li Zhou:
  A value set for documenting adverse reactions in electronic health records. 661-669
• 
  Sabrina Casucci, Li Lin, Sharon Hewner, Alexander G. Nikolaev:
  Estimating the causal effects of chronic disease combinations on 30-day hospital readmissions based on observational Medicaid data. 670-678
• 
  Bethany Percha, Yuhao Zhang, Selen Bozkurt, Daniel L. Rubin, Russ B. Altman, Curtis P. Langlotz:
  Expanding a radiology lexicon using contextual patterns in radiology reports. 679-685
• 
  Seth Klapman, Emily Sher, Julia Adler-Milstein:
  A snapshot of health information exchange across five nations: an investigation of frontline clinician experiences in emergency care. 686-693
• 
  G. Talley Holman, Steven E. Waldren, John W. Beasley, Deborah J. Cohen, Lawrence D. Dardick, Chester H. Fox, Jenna L. Marquard, Ryan Mullins, Charles Q. North, Matt Rafalski, A. Joy Rivera, Tosha B. Wetterneck:
  Meaningful use's benefits and burdens for US family physicians. 694-701
• 
  Eboni G. Price-Haywood, Qingyang Luo, Dominique Monlezun:
  Dose effect of patient-care team communication via secure portal messaging on glucose and blood pressure control. 702-708
• 
  Angela Ai, Adrian Wong, Mary G. Amato, Adam Wright:
  Communication failure: analysis of prescribers' use of an internal free-text field on electronic prescriptions. 709-714
• 
  Harley Z. Ramelson, Amanda Nederlof, Sam Karmiy, Pamela M. Neri, David P. Kiernan, Rajlakshmi Krishnamurthy, Adrienne Allen, David W. Bates:
  Closing the loop with an enhanced referral management system. 715-721
• 
  Aude Motulsky, Daniala L. Weir, Isabelle Couture, Claude Sicotte, Marie-Pierre Gagnon, David L. Buckeridge, Robyn Tamblyn:
  Usage and accuracy of medication data from nationwide health information exchange in Quebec, Canada. 722-729
• 
  Insook Cho, Eun-Hee Boo, Soo-Youn Lee, Patricia C. Dykes:
  Automatic population of eMeasurements from EHR systems for inpatient falls. 730-738

Brief Communication

• 
  Thomas George Kannampallil, John D. Manning, David W. Chestek, Jason S. Adelman, Hojjat Salmasian, Bruce L. Lambert, William L. Galanter:
  Effect of number of open charts on intercepted wrong-patient medication orders in an emergency department. 739-743

Correspondence

• 
  Naomi S. Bardach:
  Letter to the Editor in response to "Online physician ratings fail to predict actual performance on measures of quality, value, and peer review". 744-745
• 
  Timothy J. Daskivich, Brennan Spiegel:
  Response to Letter to the Editor. 745

Reviews

• 
  Tiffany C. Veinot, Charles R. Senteio, David A. Hanauer, Julie C. Lowery:
  Comprehensive process model of clinical information interaction in primary care: results of a "best-fit" framework synthesis. 746-758
• 
  Meghan Reading, Jacqueline A. Merrill:
  Converging and diverging needs between patients and providers who are collecting and using patient-generated health data: an integrative review. 759-771

Volume 25, Number 7, July 2018

Highlights

• 
  Lucila Ohno-Machado:
  The role of informatics in promoting patient safety. 773

Research and Applications

• 
  Carlos Baladrón, Alejandro Santos-Lozano, Javier M. Aguiar, Alejandro Lucia, Juan Martín-Hernández:
  Tool for filtering PubMed search results by sample size. 774-779
• 
  Ravy K. Vajravelu, Frank I. Scott, Ronac Mamtani, Hongzhe Li, Jason H. Moore, James D. Lewis:
  Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data. 780-789
• 
  You Chen, Mayur B. Patel, Candace D. McNaughton, Bradley A. Malin:
  Interaction patterns of trauma providers are associated with length of stay. 790-799
• 
  Yue Wang, Kai Zheng, Hua Xu, Qiaozhu Mei:
  Interactive medical word sense disambiguation through informed learning. 800-808
• 
  Li Wang, Yaoyun Zhang, Min Jiang, Jingqi Wang, Jiancheng Dong, Yun Liu, Cui Tao, Guoqian Jiang, Yi Zhou, Hua Xu:
  Toward a normalized clinical drug knowledge base in China - applying the RxNorm model to Chinese clinical drugs. 809-818
• 
  John Cuzzola, Ebrahim Bagheri, Jelena Jovanovic:
  UMLS to DBPedia link discovery through circular resolution. 819-826
• 
  Vahab Vahdat, Jacqueline A. Griffin, James E. Stahl, F. Clarissa Yang:
  Analysis of the effects of EHR implementation on timeliness of care in a dermatology clinic: a simulation study. 827-832
• 
  Srinivasan Suresh, Richard A. Saladino, Janet Fromkin, Emily Heineman, Tom McGinn, Rudolph Richichi, Rachel P. Berger:
  Integration of physical abuse clinical decision support into the electronic health record at a Tertiary Care Children's Hospital. 833-840
• 
  Ashley N. D. Meyer, Pamela J. Thompson, Arushi Khanna, Samir Desai, Benji K. Mathews, Elham Yousef, Anita V. Kusnoor, Hardeep Singh:
  Evaluating a mobile application for improving clinical laboratory test ordering and diagnosis. 841-847
• 
  Kimberly Whalen, Emily Lynch, Iman Moawad, Tanya John, Denise Lozowski, Brian M. Cummings:
  Transition to a new electronic health record and pediatric medication safety: lessons learned in pediatrics within a large academic health system. 848-854
• 
  Halil Kilicoglu, Graciela Rosemblat, Mario Malicki, Gerben ter Riet:
  Automatic recognition of self-acknowledged limitations in clinical research literature. 855-861
• 
  Soumi Ray, Dustin S. McEvoy, Skye Aaron, Thu-Trang T. Hickman, Adam Wright:
  Using statistical anomaly detection models to find clinical decision support malfunctions. 862-871
• 
  Christine M. Cheng, Alejandra Salazar, Mary G. Amato, Bruce L. Lambert, Lynn A. Volk, Gordon D. Schiff:
  Using drug knowledgebase information to distinguish between look-alike-sound-alike drugs. 872-884
• 
  Daniel J. Vreeman, Swapna Abhyankar, Kenneth C. Wang, Chris Carr, Beverly Collins, Daniel L. Rubin, Curtis P. Langlotz:
  The LOINC RSNA radiology playbook - a unified terminology for radiology procedures. 885-893

Brief Communication

• 
  Kathrin Blagec, Rudolf Koopmann, Mandy Crommentuijn-van Rhenen, Inge Holsappel, Cathelijne H. van der Wouden, Lidija Konta, Hong Xu, Daniela Steinberger, Enrico Just, Jesse J. Swen, Henk-Jan Guchelaar, Matthias Samwald:
  Implementing pharmacogenomics decision support across seven European countries: The Ubiquitous Pharmacogenomics (U-PGx) project. 893-898
• 
  Jennifer M. Toy, Adam Drechsler, Richard C. Waters:
  Clinical pathways for primary care: current use, interest and perceived usability. 901-906
• 
  John R. Blosnich, John Cashy, Adam J. Gordon, Jillian C. Shipherd, Michael R. Kauth, George R. Brown, Michael J. Fine:
  Using clinician text notes in electronic medical record data to validate transgender-related diagnosis codes. 905-908
• 
  Kathleen E. Walsh, Keith Marsolo, Cori Davis, Theresa Todd, Bernadette Martineau, Carlie Arbaugh, Frederique Verly, Charles Samson, Peter A. Margolis:
  Accuracy of the medication list in the electronic health record - implications for care, research, and improvement. 909-912
• 
  Dean F. Sittig, Mandana Salimi, Ranjit Aiyagari, Colin A. Banas, Brian J. Clay, Kathryn A. Gibson, Ashutosh Goel, Robert Hines, Christopher A. Longhurst, Vimal Mishra, Anwar Mohammad Sirajuddin, Tyler Satterly, Hardeep Singh:
  Adherence to recommended electronic health record safety practices across eight health care organizations. 913-918

Correspondence

• 
  David M. Klubert, Caroline Black:
  Letter to the Editor: Secondary use of electronic health record data for clinical workflow analysis. 919
• 
  Michelle R. Hribar, Michael F. Chiang:
  Response to Letter: Secondary use of electronic health record data for clinical workflow analysis. 920

Corrigendum

• 
  Erratum to: Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record. 921

Erratum

• 
  Erratum to: Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note. 924

Volume 25, Number 8, August 2018

Highlights

• 
  Lucila Ohno-Machado:
  Informatics for all: from provider- to patient-based applications that can include family and friends. 923

Research and Applications

• 
  Xiruo Ding, Ziad Gellad, III Chad Mather, Pamela Barth, Eric G. Poon, Mark Newman, Benjamin Alan Goldstein:
  Designing risk prediction models for ambulatory no-shows across different specialties and clinics. 924-930
• 
  Xunyi Wang, Srikanth Parameswaran, Darshan Bagul, Rajiv Kishore:
  Can online social support be detrimental in stigmatized chronic diseases? A quadratic model of the effects of informational and emotional support on self-care behavior of HIV patients. 931-944
• 
  Ken Chang, Niranjan Balachandar, Carson K. Lam, Darvin Yi, James M. Brown, Andrew Beers, Bruce R. Rosen, Daniel L. Rubin, Jayashree Kalpathy-Cramer:
  Distributed deep learning networks among institutions for medical imaging. 945-954
• 
  Ken Cheung, Wodan Ling, Chris J. Karr, Kenneth Weingardt, Stephen M. Schueller, David C. Mohr:
  Evaluation of a recommender app for apps for the treatment of depression and anxiety: an analysis of longitudinal user engagement. 955-962
• 
  Enrico W. Coiera, Elske Ammenwerth, Andrew Georgiou, Farah Magrabi:
  Does health informatics have a replication crisis? 963-968
• 
  Jenna Marie Reps, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, Peter R. Rijnbeek:
  Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. 969-975
• 
  Amol Utrankar, Tilicia L. Mayo-Gamble, Whitney Allen, Laurie L. Novak, Adetola A. Kassim, Kemberlee Bonnet, David Schlundt, Velma M. Murry, Gretchen Purcell Jackson, Michael R. DeBaun, Robert M. Cronin:
  Technology use and preferences to support clinical practice guideline awareness and adherence in individuals with sickle cell disease. 976-988
• 
  Jean O. Taylor, Andrea L. Hartzler, Katie P. Osterhage, George Demiris, Anne M. Turner:
  Monitoring for change: the role of family and friends in helping older adults manage personal health information. 989-999
• 
  Halim Abbas, Ford Garberson, Eric Glover, Dennis P. Wall:
  Machine learning approach for early detection of autism by combining questionnaire and home video screening. 1000-1007
• 
  Marianne Sharko, Lauren Wilcox, Matthew K. Hong, Jessica S. Ancker:
  Variability in adolescent portal privacy features: how the unique privacy needs of the adolescent patient create a complex decision-making process. 1008-1017
• 
  John Robert Bautista, Sonny Rosenthal, Trisha Tsui-Chuan Lin, Yin-Leng Theng:
  Psychometric evaluation of the Smartphone for Clinical Work Scale to measure nurses' use of smartphones for work purposes. 1018-1025
• 
  Thomas J. Reese, Noa Segall, Paige Nesbitt, Guilherme Del Fiol, Rosalie Waller, Brekk C. Macpherson, Joseph E. Tonna, Melanie C. Wright:
  Patient information organization in the intensive care setting: expert knowledge elicitation with card sorting methods. 1026-1035
• 
  Da Tao, Juan Yuan, Xingda Qu:
  Presenting self-monitoring test results for consumers: the effects of graphical formats and age. 1036-1046
• 
  Frank Pandolfe, Adam Wright, Warner V. Slack, Charles Safran:
  Rethinking the outpatient medication list: increasing patient activation and education while architecting for centralization and improved medication reconciliation. 1047-1053
• 
  Chad D. Meyerhoefer, Susan A. Sherer, Mary E. Deily, Shin-Yi Chou, Xiaohui Guo, Jie Chen, Michael Sheinberg, Donald L. Levick:
  Provider and patient satisfaction with the integration of ambulatory and hospital EHR systems. 1054-1063

Brief Communication

• 
  Adam Wright, Pamela M. Neri, Skye Aaron, Thu-Trang T. Hickman, Francine L. Maloney, Daniel A. Solomon, Dustin McEvoy, Angela Ai, Kevin W. Kron, Gianna Zuccotti:
  Development and evaluation of a novel user interface for reviewing clinical microbiology results. 1064-1068
• 
  Martin Karpefors, James Weatherall:
  The Tendril Plot - a novel visual summary of the incidence, significance and temporal aspects of adverse events in clinical trials. 1069-1073
• 
  Timothy B. Plante, Anna C. O'Kelly, Zane T. Macfarlane, Bruno Urrea, Lawrence J. Appel, Edgar R. Miller III, Roger S. Blumenthal, Seth S. Martin:
  Trends in user ratings and reviews of a popular yet inaccurate blood pressure-measuring smartphone app. 1074-1079

Perspective

• 
  Tiffany C. Veinot, Hannah Mitchell, Jessica S. Ancker:
  Good intentions are not enough: how informatics interventions can worsen inequality. 1080-1088

Review

• 
  Rasool Nouria, Sharareh R. Niakan Kalhori, Marjan Ghazi Saeedi, Guillaume Marchand, Mobin Yasini:
  Criteria for assessing the quality of mHealth apps: a systematic review. 1089-1098
• 
  Bernd Carsten Stahl, Stephen Rainey, Emma Harris, B. Tyr Fothergill:
  The role of ethics in data governance of large neuro-ICT projects. 1099-1107

Correspondence

• 
  Suranga Nath Kasthurirathne, Joshua R. Vest, Nir Menachemi, Paul K. Halverson, Shaun J. Grannis:
  Response to letter to the Editor on "Assessing the capacity of social determinants of health data to augment predictive models identifying patients in need of wraparound social services". 1108
• 
  Jessica S. Ancker, Min-hyung Kim, Yiye Zhang, Yongkang Zhang, Jyotishman Pathak:
  The potential value of social determinants of health in predicting health outcomes. 1109-1110

Erratum

• 
  Erratum to: Clinical pathways for primary care: current use, interest and perceived usability. 1111

Volume 25, Number 9, September 2018

Highlights

• 
  Lucila Ohno-Machado:
  Sharing data from electronic health records within, across, and beyond healthcare institutions: Current trends and perspectives. 1113

Research and Applications

• 
  Jordan Everson, Julia Adler-Milstein:
  Gaps in health information exchange between hospitals that treat many shared patients. 1114-1121
• 
  Kathleen M. Brelsford, Susan E. Spratt, Laura M. Beskow:
  Research use of electronic health records: patients' perspectives on contact by researchers. 1122-1129
• 
  Esther M. Friedman, Thomas E. Trail, Christine Anne Vaughan, Terri Tanielian:
  Online peer support groups for family caregivers: are they reaching the caregivers with the greatest needs? 1130-1136
• 
  JoAnn M. Sperl-Hillen, A. Lauren Crain, Karen L. Margolis, Heidi L. Ekstrom, Deepika Appana, Gerald Amundson, Rashmi Sharma, Jay R. Desai, Patrick J. O'Connor:
  Clinical decision support directed to primary care patients and providers reduces cardiovascular risk: a randomized trial. 1137-1146
• 
  A Jay Holmgren, Eric W. Ford:
  Assessing the impact of health system organizational structure on hospital electronic data sharing. 1147-1152
• 
  Alan Fossa, Sigall K. Bell, Catherine M. DesRoches:
  OpenNotes and shared decision making: a growing practice in clinical transparency and how it can support patient-centered care. 1153-1159
• 
  Robert W. Grundmeier, Rui Xiao, Rachael K. Ross, Mark J. Ramos, Dean Karavite, Jeremy J. Michel, Jeffrey S. Gerber, Susan E. Coffin:
  Identifying surgical site infections in electronic health data using predictive models. 1160-1166
• 
  Magaly Ramirez, Richard Maranon, Jeffery Fu, Janet S. Chon, Kimberly Chen, Carol M. Mangione, Gerardo Moreno, Douglas S. Bell:
  Primary care provider adherence to an alert for intensification of diabetes blood pressure medications before and after the addition of a "chart closure" hard stop. 1167-1174
• 
  Russell J. McCulloh, Sarah D. Fouquet, Joshua Herigon, Eric A. Biondi, Brandan Kennedy, Ellen K. Kerns, Adrienne DePorre, Jessica L. Markham, Y. Raymond Chan, Krista Nelson, Jason G. Newland:
  Development and implementation of a mobile device-based pediatric electronic decision support tool as part of a national practice standardization project. 1175-1182
• 
  Sarah P. Slight, Diane L. Seger, Calvin Franz, Adrian Wong, David W. Bates:
  The national cost of adverse drug events resulting from inappropriate medication-related alert overrides in the United States. 1183-1188
• 
  Joshua R. Vest, Kosali Simon:
  Hospitals' adoption of intra-system information exchange is negatively associated with inter-system information exchange. 1189-1196

Brief Communications

• 
  Raj M. Ratwani, Erica L. Savage, Amy Will, Ryan Arnold, Saif S. Khairat, Kristen E. Miller, Rollin J. Fairbanks, Michael L. Hodgkins, A. Zachary Hettinger:
  A usability and safety analysis of electronic health records: a multi-center study. 1197-1201
• 
  Dora Cheung, Ethan Cumbler, Gary Hale, Jonathan Michael Pell:
  Reining in the QTc: reducing the risk of Torsades de Pointes across a major health system. 1202-1205
• 
  Andrea L. Gilmore-Bykovskyi, Laura M. Block, Lily Walljasper, Nikki Hill, Carey E. Gleason, Manish N. Shah:
  Unstructured clinical documentation reflecting cognitive and behavioral dysfunction: toward an EHR-based phenotype for cognitive impairment. 1206-1212
• 
  Lejla Gurbeta, Almir Badnjevic, Mirjana Maksimovic, Enisa Omanovic-Miklicanin, Ervin Sejdic:
  A telehealth system for automated diagnosis of asthma and chronical obstructive pulmonary disease. 1213-1217

Perspective

• 
  Carolyn T. Lye, Howard P. Forman, Jodi G. Daniel, Harlan M. Krumholz:
  The 21st Century Cures Act and electronic health records one year later: will patients see the benefits? 1218-1220

Reviews

• 
  Jason P. Burnham, Chenyang Lu, Lauren H. Yaeger, Thomas C. Bailey, Marin Kollef:
  Using wearable technology to predict health outcomes: a literature review. 1221-1227
• 
  Srinivas R. Mummadi, Raghavendra Mishra:
  Effectiveness of provider price display in computerized physician order entry (CPOE) on healthcare quality: a systematic review. 1228-1239
• 
  Catherine Anne Grandy, Jennifer R. Donnan, Justin T. Peddle, Kristen Romme, Satpyul Kim, John-Michael Gamble:
  A systematic assessment of the availability and clinical drug information coverage of machine-readable clinical drug data sources for building knowledge translation products. 1240-1247
• 
  Liliana Laranjo, Adam G. Dunn, Huong Ly Tong, Ahmet Baki Kocaballi, Jessica A. Chen, Rabia Bashir, Didi Surian, Blanca Gallego, Farah Magrabi, Annie Y. S. Lau, Enrico W. Coiera:
  Conversational agents in healthcare: a systematic review. 1248-1258
• 
  Nir Menachemi, Saurabh Rahurkar, Christopher A. Harle, Joshua R. Vest:
  The benefits of health information exchange: an updated systematic review. 1259-1265

Correspondence

• 
  Celso A. Inguane, Rassul Nalá:
  Rejoinder to "Ethical issues in the use of SMS messaging in HIV care and treatment in low-and-middle-income countries". 1266-1267
• 
  Ezequiel B. Ossemane, Troy D. Moon, Martin Chieng Were, Elizabeth Heitman:
  Response to Rejoinder to "Ethical issue in the use of SMS messaging in HIV care and treatment in low- and middle-income countries: case examples from Mozambique". 1268

Corrigendum

• 
  Corrigendum to: A snapshot of health information exchange across five nations: an investigation of frontline clinician experiences in emergency care. 1269
• 
  Corrigendum to: Journal of the American Medical Informatics Association, Volume 23, Issue 1, 1 January 2016, Pages 230-239, https: //doi.org/10.1093/jamia/ocv100. 1270-1271

Volume 25, Number 10, October 2018

Highlights

• 
  Lucila Ohno-Machado:
  Data science and artificial intelligence to improve clinical practice and research. 1273

Research and Applications

• 
  Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez:
  Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task. 1274-1283
• 
  John B. Zamjahn, Raquel Baroni de Carvalho, Megan H. Bronson, Deborah D. Garbee, John T. Paige:
  eAssessment: development of an electronic version of the Objective Structured Assessment of Debriefing tool to streamline evaluation of video recorded debriefings. 1284-1291
• 
  Sharidan K. Parr, Matthew S. Shotwell, Alvin D. Jeffery, Thomas A. Lasko, Michael E. Matheny:
  Automated mapping of laboratory tests to LOINC codes using noisy labels in a national electronic health record system database. 1292-1300
• 
  Ross Gruetzemacher, Ashish Gupta, David B. Paradice:
  3D deep learning for detecting pulmonary nodules in CT scans. 1301-1310
• 
  Behrooz Davazdahemami, Dursun Delen:
  A chronological pharmacovigilance network analytics approach for predicting adverse drug events. 1311-1321
• 
  Megan J. Hoopes, Heather Angier, Lewis A. Raynor, Andrew Suchocki, John Muench, Miguel Marino, Pedro Rivera, Nathalie Huguet:
  Development of an algorithm to link electronic health record prescriptions with pharmacy dispense claims. 1322-1330
• 
  Jeffrey G. Klann, Lori C. Phillips, Christopher Herrick, Matthew A. Joss, Kavishwar B. Wagholikar, Shawn N. Murphy:
  Web services for data warehouses: OMOP and PCORnet on i2b2. 1331-1338
• 
  Justin Mower, Devika Subramanian, Trevor Cohen:
  Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications. 1339-1350
• 
  Guo-Qiang Zhang, Licong Cui, Remo Mueller, Shiqiang Tao, Matthew Kim, Michael Rueschman, Sara Mariani, Daniel R. Mobley, Susan Redline:
  The National Sleep Research Resource: towards a sleep data commons. 1351-1358
• 
  Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, Isaac S. Kohane, Katherine P. Liao:
  PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. 1359-1365
• 
  Daniel J. Feller, Marissa Burgermaster, Matthew E. Levine, Arlene M. Smaldone, Patricia G. Davidson, David J. Albers, Lena Mamykina:
  A visual analytics approach for pattern-recognition in patient-generated data. 1366-1374

Case Report

• 
  Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group:
  Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. 1375-1381

Brief Communications

• 
  Karol M. Pencina, Ralph B. D'Agostino, Ramachandran S. Vasan, Michael J. Pencina:
  Microsimulation model to predict incremental value of biomarkers added to prognostic models. 1382-1385
• 
  William Speier, Eldin Dzubur, Mary Zide, Chrisandra Shufelt, Sandy Joung, Jennifer E. Van Eyk, C. Noel Bairey Merz, Mayra Lopez, Brennan Spiegel, Corey W. Arnold:
  Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers. 1386-1391

Perspective

• 
  David J. Albers, Matthew E. Levine, Andrew M. Stuart, Lena Mamykina, Bruce J. Gluckman, George Hripcsak:
  Mechanistic machine learning: how data assimilation leverages physiologic knowledge using Bayesian inference to forecast the future, infer the present, and phenotype. 1392-1401
• 
  Daniel M. Goldenholz, Shira R. Goldenholz, Kaarkuzhali B. Krishnamurthy, John D. Halamka, Barbara Karp, Matthew Tyburski, David Wendler, Robert Moss, Kenzie L. Preston, William Theodore:
  Using mobile location data in biomedical research while preserving privacy. 1402-1406

Reviews

• 
  Sara Belle Donevant, Robin Dawson Estrada, Joan Marie Culley, Brian Habing, Swann Arp Adams:
  Exploring app features with outcomes in mHealth studies involving chronic respiratory diseases, diabetes, and hypertension: a targeted exploration of the literature. 1407-1418
• 
  Cao Xiao, Edward Choi, Jimeng Sun:
  Opportunities and challenges in developing deep learning models using electronic health records data: a systematic review. 1419-1428

Erratum

• 
  Erratum. 1429

Volume 25, Number 11, November 2018

Highlights

• 
  Lucila Ohno-Machado:
  Clinical informatics applications of medication reconciliation, decision support systems, and online portal patient-provider communications. 1431

Research and Applications

• 
  Mary Regina Boland, Aditya Kashyap, Jiadi Xiong, John H. Holmes, Scott Lorch:
  Development and validation of the PEPPER framework (Prenatal Exposure PubMed ParsER) with applications to food additives. 1432-1443
• 
  Zhijun Yin, Morgan Harrell, Jeremy L. Warner, Qingxia Chen, Daniel Fabbri, Bradley A. Malin:
  The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation. 1444-1451
• 
  Kuo Yang, Ning Wang, Guangming Liu, Ruyu Wang, Jian Yu, Runshun Zhang, Jianxin Chen, Xuezhong Zhou:
  Heterogeneous network embedding for identifying symptom candidate genes. 1452-1459
• 
  Jennifer E. Prey, Fernanda Polubriaginof, Lisa V. Grossman, Ruth M. Masterson Creber, Demetra S. Tsapepas, Rimma Perotte, Min Qian, Susan Restaino, Suzanne Bakken, George Hripcsak, Leigh Efird, Joseph Underwood, David K. Vawdrey:
  Engaging hospital patients in the medication reconciliation process using tablet computers. 1460-1469
• 
  Robert M. Cronin, Douglas Conway, David M. Condon, Rebecca N. Jerome, Daniel W. Byrne, Paul A. Harris:
  Patient and healthcare provider views on a patient-reported outcomes portal. 1470-1480
• 
  Vivek Kumar Singh, Utkarsh Shrivastava, Lina Bouayad, Balaji Padmanabhan, Anna Ialynytchev, Susan K. Schultz:
  Machine learning for psychiatric patient triaging: an investigation of cascading classifiers. 1481-1487
• 
  Sophie Marien, Delphine Legrand, Ravi Ramdoyal, Jimmy Nsenga, Gustavo Ospina, Valéry Ramon, Benoit Boland, Anne Spinewine:
  A web application to involve patients in the medication reconciliation process: a user-centered usability and usefulness study. 1488-1500
• 
  Evan W. Orenstein, Irit R. Rasooly, Mark V. Mai, Adam C. Dziorny, Wanczyk Phillips, Levon Utidjian, Anthony A. Luberti, Jill Posner, Rebecca Tenney-Soeiro, Christopher P. Bonafide:
  Influence of simulation on electronic health record use patterns among pediatric residents. 1501-1506
• 
  Laila Cochon, Ronilda Lacson, Aijia Wang, Neena Kapoor, Ivan K. Ip, Sonali Desai, Allen Kachalia, Jack Dennerlein, James C. Benneyan, Ramin Khorasani:
  Assessing information sources to elucidate diagnostic process errors in radiologic imaging - a human factors framework. 1507-1515
• 
  Yuze Yang, Stacy Ward-Charlerie, Nitu Kashyap, Richelle DeMayo, Thomas Agresta, James Green:
  Analysis of medication therapy discontinuation orders in new electronic prescriptions and opportunities for implementing CancelRx. 1516-1523
• 
  Jason L. Salemi, Rachel E. Rutkowski, Jean Paul Tanner, Jennifer Matas, Russell S. Kirby:
  Evaluating the impact of expanding the number of diagnosis codes reported in inpatient discharge databases on the counts and rates of birth defects. 1524-1533

Case Report

• 
  Jay K. Nathan, Jenevra Foley, Tiffany Hoang, James Hiner, Stephanie Brooks, Julian L. Gendreau, William J. Meurer, Aditya S. Pandey, Eric E. Adelman:
  The stroke navigator: meaningful use of the electronic health record to efficiently report inpatient stroke care quality. 1534-1539

Brief Communications

• 
  Jennifer A. Pacheco, Luke V. Rasmussen, Richard C. Kiefer, Thomas R. Campion Jr., Peter Speltz, Robert J. Carroll, Sarah C. Stallings, Huan Mo, Monika Ahuja, Guoqian Jiang, Eric R. LaRose, Peggy L. Peissig, Ning Shang, Barbara Benoit, Vivian S. Gainer, Kenneth Borthwick, Kathryn L. Jackson, Ambrish Sharma, Andy Yizhou Wu, Abel N. Kho, Dan M. Roden, Jyotishman Pathak, Joshua C. Denny, William K. Thompson:
  A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. 1540-1546
• 
  Yiye Zhang, Richard Trepp, Weiguang Wang, Jorge M. Luna, David K. Vawdrey, Victoria Tiase:
  Developing and maintaining clinical decision support using clinical knowledge and machine learning: the case of order sets. 1547-1551
• 
  Adam Wright, Aileen P. Wright, Skye Aaron, Dean F. Sittig:
  Smashing the strict hierarchy: three cases of clinical decision support malfunctions involving carvedilol. 1552-1555

Reviews

• 
  Emily M. Powers, Richard N. Shiffman, Edward R. Melnick, Andrew Hickner, Mona Sharifi:
  Efficacy and unintended consequences of hard-stop alerts in electronic health record systems: a systematic review. 1556-1566
• 
  Kerry A. McBrien, Sepideh Souri, Nicola E. Symonds, Azin Rouhi, Brendan C. Lethebe, Tyler S. Williamson, Stephanie Garies, Richard Birtwhistle, Hude Quan, Gabriel E. Fabreau, Paul E. Ronksley:
  Identification of validated case definitions for medical conditions used in primary care electronic medical record databases: a systematic review. 1567-1578

Messages from AMIA

• 
  Carolyn Petersen, Eta S. Berner, Peter J. Embí, Kate Fultz Hollis, Kenneth W. Goodman, Ross Koppel, Christoph U. Lehmann, Harold P. Lehmann, Sarah A. Maulden, Kyle A. McGregor, Anthony Solomonides, Vignesh Subbian, Enrique Terrazas, Peter Winkelstein:
  AMIA's code of professional and ethical conduct 2018. 1579-1582

Volume 25, Number 12, December 2018

Highlights

• 
  Lucila Ohno-Machado:
  A diversified informatics portfolio covering health sciences and healthcare. 1583

Editorial

• 
  Lucila Ohno-Machado:
  Reflections on the journey of editing a scientific journal. 1584-1585

Research and Applications

• 
  Thomas Effland, Anna Lawson, Sharon Balter, Katelynn Devinney, Vasudha Reddy, HaeNa Waechter, Luis Gravano, Daniel Hsu:
  Discovering foodborne illness in online restaurant reviews. 1586-1592
• 
  Jessica S. Ancker, Marianne Sharko, Matthew Hong, Hannah Mitchell, Lauren Wilcox:
  Should parents see their teen's medical record? Asking about the effect on adolescent-doctor communication changes attitudes. 1593-1599
• 
  Cameron Carlin, Long Van Ho, David R. Ledbetter, Melissa D. Aczon, Randall C. Wetzel:
  Predicting individual physiologically acceptable states at discharge from a pediatric intensive care unit. 1600-1607
• 
  Willem G. van Panhuis, Anne Cross, Donald S. Burke:
  Project Tycho 2.0: a repository to improve the integration and reuse of data for global population health. 1608-1617
• 
  George Hripcsak, Matthew E. Levine, Ning Shang, Patrick B. Ryan:
  Effect of vocabulary mapping for conditions on phenotype cohorts. 1618-1625
• 
  S. Ryan Greysen, James D. Harrison, Charles Rareshide, Yimdriuska Magan, Neil Seghal, Jaime Rosenthal, Ronald Jacolbia, Andrew D. Auerbach:
  A randomized controlled trial to improve engagement of hospitalized patients with their patient portals. 1626-1633
• 
  Alpha Oumar Diallo, Asha Krishnaswamy, Stuart K. Shapira, Matthew E. Oster, Mary G. George, Jenna C. Adams, Elizabeth R. Walker, Paul Weiss, Mohammed K. Ali, Wendy Book:
  Detecting moderate or complex congenital heart defects in adults from an electronic health records system. 1634-1642
• 
  Siddharth Biswal, Haoqi Sun, Balaji Goparaju, M. Brandon Westover, Jimeng Sun, Matt T. Bianchi:
  Expert-level sleep scoring with deep neural networks. 1643-1650
• 
  Ronilda Lacson, Romeo Laroya, Aijia Wang, Neena Kapoor, Daniel I Glazer, Atul Shinagare, Ivan K. Ip, Sameer Malhotra, Keith Hentel, Ramin Khorasani:
  Integrity of clinical information in computerized order requisitions for diagnostic imaging. 1651-1656

Perspective

• 
  Annette L. Valenta, Eta S. Berner, Suzanne Austin Boren, Gloria J. Deckard, Christina Eldredge, Douglas B. Fridsma, Cynthia S. Gadd, Yang Gong, Todd R. Johnson, Josette Jones, E. LaVerne Manos, Kirk T. Phillips, Nancy K. Roderer, Douglas Rosendale, Anne M. Turner, Günter Tusch, Jeffrey J. Williamson, Stephen B. Johnson:
  AMIA Board White Paper: AMIA 2017 core competencies for applied health informatics education at the master's degree level. 1657-1668

Reviews

• 
  Ian Barnett, John Torous, Patrick C. Staples, Matcheri S. Keshavan, Jukka-Pekka Onnela:
  Beyond smartphones and sensors: choosing appropriate statistical methods for the analysis of longitudinal data. 1669-1674
• 
  Y. Alicia Hong, Jinmyoung Cho:
  Assessment of eHealth behaviors in national surveys: a systematic review of instruments. 1675-1684
• 
  Hannah Schmitz, Carol L. Howe, David G. Armstrong, Vignesh Subbian:
  Leveraging mobile health applications for biomedical research and citizen science: a scoping review. 1685-1695