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Aaron Carass
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2020 – today
- 2024
- [j30]Yihao Liu
, Junyu Chen, Shuwen Wei, Aaron Carass, Jerry L. Prince:
On Finite Difference Jacobian Computation in Deformable Image Registration. Int. J. Comput. Vis. 132(9): 3678-3688 (2024) - [j29]Yuxing Li
Deep learning enables accurate brain tissue microstructure analysis based on clinically feasible diffusion magnetic resonance imaging. NeuroImage 300: 120858 (2024) - [c139]Junyu Chen, Yihao Liu, Shuwen Wei, Zhangxing Bian, Aaron Carass, Yong Du:
From Registration Uncertainty to Segmentation Uncertainty. ISBI 2024: 1-5 - [c138]Jinwei Zhang, Lianrui Zuo, Blake E. Dewey, Samuel W. Remedios, Dzung L. Pham, Aaron Carass, Jerry L. Prince:
Towards an Accurate and Generalizable Multiple Sclerosis Lesion Segmentation Model Using Self-Ensembled Lesion Fusion. ISBI 2024: 1-5 - [c137]Savannah Hays, Samuel W. Remedios
Beyond MR Image Harmonization: Resolution Matters Too. SASHIMI@MICCAI 2024: 34-44 - [i27]Zhangxing Bian, Ahmed Alshareef, Shuwen Wei, Junyu Chen, Yuli Wang, Jonghye Woo, Dzung L. Pham, Jiachen Zhuo, Aaron Carass, Jerry L. Prince:
Is Registering Raw Tagged-MR Enough for Strain Estimation in the Era of Deep Learning? CoRR abs/2401.17571 (2024) - [i26]Junyu Chen, Yihao Liu, Shuwen Wei, Zhangxing Bian, Aaron Carass, Yong Du:
From Registration Uncertainty to Segmentation Uncertainty. CoRR abs/2403.05111 (2024) - [i25]Yihao Liu, Junyu Chen, Lianrui Zuo, Aaron Carass, Jerry L. Prince:
Vector Field Attention for Deformable Image Registration. CoRR abs/2407.10209 (2024) - 2023
- [j28]Lianrui Zuo
HACA3: A unified approach for multi-site MR image harmonization. Comput. Medical Imaging Graph. 109: 102285 (2023) - [c136]Peiyu Duan, Yuan Xue, Shuo Han, Lianrui Zuo, Aaron Carass, Caitlyn Bernhard, Savannah Hays, Peter A. Calabresi, Susan M. Resnick, James S. Duncan, Jerry L. Prince:
Rapid Brain Meninges Surface Reconstruction with Layer Topology Guarantee. ISBI 2023: 1-5 - [c135]Anqi Feng, Yuan Xue, Yuli Wang, Chang Yan, Zhangxing Bian, Muhan Shao, Jiachen Zhuo, Rao P. Gullapalli, Aaron Carass, Jerry L. Prince:
Label Propagation Via Random Walk for Training Robust Thalamus Nuclei Parcellation Model from Noisy Annotations. ISBI 2023: 1-5 - [c134]Yuli Wang, Anqi Feng, Yuan Xue, Lianrui Zuo, Yihao Liu, Ari M. Blitz, Mark G. Luciano, Aaron Carass, Jerry L. Prince:
Automated Ventricle Parcellation and Evan's Ratio Computation in Pre- and Post-Surgical Ventriculomegaly. ISBI 2023: 1-5 - [c133]Allen Hong, Aaron Carass, Lianrui Zuo, Jerry L. Prince, Ahmed Alshareef:
Investigating the effect of cerebral atrophy on brain deformation using subject-specific models. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2023 - [c132]Zhangxing Bian
MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI 2023: 24-34 - [c131]Shuwen Wei
Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation. OMIA@MICCAI 2023: 42-51 - [c130]Samuel W. Remedios, Shuo Han, Lianrui Zuo, Aaron Carass, Dzung L. Pham, Jerry L. Prince, Blake E. Dewey:
Self-Supervised Super-Resolution for Anisotropic MR Images with and Without Slice Gap. SASHIMI@MICCAI 2023: 118-128 - [c129]Zhangxing Bian, Fangxu Xing, Jinglun Yu, Muhan Shao, Yihao Liu, Aaron Carass, Jonghye Woo, Jerry L. Prince:
DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue. MIDL 2023: 134-150 - [c128]Yuan Xue, Lianrui Zuo, Samuel W. Remedios, Blake E. Dewey, Peiyu Duan, Yihao Liu, Rendong Zhang, Scott D. Newsome, Ellen M. Mowry, Aaron Carass, Jerry L. Prince:
Unsupervised quality assurance for brain MR image rigid registration using latent shape representation. Medical Imaging: Image Processing 2023 - [c127]Zhangxing Bian
DrDisco: Deep Registration for Distortion Correction of diffusion MRI with single phase-encoding. Medical Imaging: Image Processing 2023 - [c126]Zhangxing Bian
FastCod: fast brain connectivity in diffusion imaging. Medical Imaging: Image Processing 2023 - [c125]Samuel W. Remedios, Blake E. Dewey, Aaron Carass, Dzung L. Pham, Jerry L. Prince:
A deep generative prior for high-resolution isotropic MR head slices. Medical Imaging: Image Processing 2023 - [c124]Pouria Tohidi, Shuo Han, Lianrui Zuo, Jiachen Zhuo, Steve Roys, Aaron Carass, Rao P. Gullapalli, Jerry L. Prince:
Joint synthesis of WMn MPRAGE and parameter maps using deep learning and an imaging equation. Medical Imaging: Image Processing 2023 - [c123]Yuli Wang, Anqi Feng, Yuan Xue, Muhan Shao, Ari M. Blitz, Mark D. Luciano, Aaron Carass, Jerry L. Prince:
Investigation of probability maps in deep-learning-based brain ventricle parcellation. Medical Imaging: Image Processing 2023 - [c122]Chang Yan, Muhan Shao, Zhangxing Bian
Segmenting thalamic nuclei from manifold projections of multi-contrast MRI. Medical Imaging: Image Processing 2023 - [c121]Lianrui Zuo, Yuan Xue, Blake E. Dewey, Yihao Liu, Jerry L. Prince, Aaron Carass:
A latent space for unsupervised MR image quality control via artifact assessment. Medical Imaging: Image Processing 2023 - [i24]Chang Yan, Muhan Shao, Zhangxing Bian
Segmenting thalamic nuclei from manifold projections of multi-contrast MRI. CoRR abs/2301.06114 (2023) - [i23]Zhangxing Bian, Fangxu Xing, Jinglun Yu, Muhan Shao, Yihao Liu, Aaron Carass, Jonghye Woo, Jerry L. Prince:
Deep Unsupervised Phase-based 3D Incompressible Motion Estimation in Tagged-MRI. CoRR abs/2301.07234 (2023) - [i22]Lianrui Zuo, Yuan Xue, Blake E. Dewey, Yihao Liu, Jerry L. Prince, Aaron Carass:
A latent space for unsupervised MR image quality control via artifact assessment. CoRR abs/2302.00528 (2023) - [i21]Junyu Chen, Yihao Liu, Shuwen Wei, Zhangxing Bian, Shalini Subramanian, Aaron Carass, Jerry L. Prince, Yong Du:
A Survey on Deep Learning in Medical Image Registration: New Technologies, Uncertainty, Evaluation Metrics, and Beyond. CoRR abs/2307.15615 (2023) - [i20]Zhangxing Bian, Shuwen Wei, Yihao Liu, Junyu Chen, Jiachen Zhuo, Fangxu Xing, Jonghye Woo, Aaron Carass, Jerry L. Prince:
MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction. CoRR abs/2308.02949 (2023) - [i19]Jinwei Zhang, Lianrui Zuo, Blake E. Dewey, Samuel W. Remedios, Dzung L. Pham, Aaron Carass, Jerry L. Prince:
Towards an accurate and generalizable multiple sclerosis lesion segmentation model using self-ensembled lesion fusion. CoRR abs/2312.01460 (2023) - [i18]Zejun Wu, Samuel W. Remedios, Blake E. Dewey, Aaron Carass, Jerry L. Prince:
AniRes2D: Anisotropic Residual-enhanced Diffusion for 2D MR Super-Resolution. CoRR abs/2312.04385 (2023) - 2022
- [j27]Yihao Liu
Disentangled Representation Learning for OCTA Vessel Segmentation With Limited Training Data. IEEE Trans. Medical Imaging 41(12): 3686-3698 (2022) - [c120]Ahmed Alshareef, Aaron Carass, Andrew K. Knutsen, Kshitiz Upadhyay, Matthew E. Peters, K. T. Ramesh, Jerry L. Prince:
Investigating the effect of ventricle size on brain deformation using computational models. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022 - [c119]Ahmed Alshareef, Curtis L. Johnson, Aaron Carass, Andrew K. Knutsen, Peyton L. Delgorio, Grace McIlvain, Alexa M. Diano, K. T. Ramesh, Philip V. Bayly
Relationship between cerebral vasculature and brain stiffness measured using MR elastography. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022 - [c118]Pouria Tohidi
Multiple Sclerosis brain lesion segmentation with different architecture ensembles. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022 - [c117]Lianrui Zuo, Yihao Liu, Yuan Xue, Shuo Han, Murat Bilgel, Susan M. Resnick, Jerry L. Prince, Aaron Carass:
Disentangling a Single MR Modality. DALI@MICCAI 2022: 54-63 - [c116]Yuan Xue
Bi-directional Synthesis of Pre- and Post-contrast MRI via Guided Feature Disentanglement. SASHIMI@MICCAI 2022: 55-65 - [c115]Yihao Liu, Lianrui Zuo, Shuo Han, Yuan Xue, Jerry L. Prince, Aaron Carass:
Coordinate Translator for Learning Deformable Medical Image Registration. MMMI@MICCAI 2022: 98-109 - [c114]Germain Morilhat, Naomi Kifle, Sandra FinesilverSmith, Bram Ruijsink, Vittoria Vergani, Habtamu Tegegne Desita, Zerubabel Tegegne Desita, Esther Puyol-Antón, Aaron Carass, Andrew P. King:
Deep Learning-Based Segmentation of Pleural Effusion from Ultrasound Using Coordinate Convolutions. DeCaF/FAIR@MICCAI 2022: 168-177 - [c113]Samuel W. Remedios, Shuo Han, Yuan Xue
Deep Filter Bank Regression for Super-Resolution of Anisotropic MR Brain Images. MICCAI (6) 2022: 613-622 - [c112]Peiyu Duan, Shuo Han, Lianrui Zuo, Yang An, Yihao Liu, Ahmed Alshareef, Junghoon Lee, Aaron Carass, Susan M. Resnick, Jerry L. Prince:
Cranial meninges reconstruction based on convolutional networks and deformable models: applications to longitudinal study of normal aging. Medical Imaging: Image Processing 2022 - [c111]Chenyu Gao, Linghao Jin, Jerry L. Prince, Aaron Carass:
Effects of defacing whole head MRI on neuroanalysis. Medical Imaging: Image Processing 2022 - [c110]Savannah Hays, Lianrui Zuo, Aaron Carass, Jerry L. Prince:
Evaluating the impact of MR image contrast on whole brain segmentation. Medical Imaging: Image Processing 2022 - [c109]Muhan Shao, Lianrui Zuo, Aaron Carass, Jiachen Zhuo, Rao P. Gullapalli, Jerry L. Prince:
Evaluating the impact of MR image harmonization on thalamus deep network segmentation. Medical Imaging: Image Processing 2022 - [i17]Yihao Liu, Lianrui Zuo, Shuo Han, Jerry L. Prince, Aaron Carass:
Coordinate Translator for Learning Deformable Medical Image Registration. CoRR abs/2203.03626 (2022) - [i16]Lianrui Zuo, Yihao Liu, Yuan Xue, Shuo Han, Murat Bilgel, Susan M. Resnick, Jerry L. Prince, Aaron Carass:
Disentangling A Single MR Modality. CoRR abs/2205.04982 (2022) - [i15]Germain Morilhat, Naomi Kifle, Sandra FinesilverSmith, Bram Ruijsink, Vittoria Vergani, Habtamu Tegegne Desita, Zerubabel Tegegne Desita, Esther Puyol-Antón, Aaron Carass, Andrew P. King:
Deep Learning-based Segmentation of Pleural Effusion From Ultrasound Using Coordinate Convolutions. CoRR abs/2208.03305 (2022) - [i14]Samuel W. Remedios, Shuo Han, Yuan Xue, Aaron Carass, Trac D. Tran, Dzung L. Pham, Jerry L. Prince:
Deep filter bank regression for super-resolution of anisotropic MR brain images. CoRR abs/2209.02611 (2022) - [i13]Lianrui Zuo, Yihao Liu, Yuan Xue, Blake E. Dewey, Murat Bilgel, Ellen M. Mowry, Scott D. Newsome, Peter A. Calabresi, Susan M. Resnick, Jerry L. Prince, Aaron Carass:
HACA3: A Unified Approach for Multi-site MR Image Harmonization. CoRR abs/2212.06065 (2022) - 2021
- [j26]Yufan He, Aaron Carass, Yihao Liu, Bruno M. Jedynak
Structured layer surface segmentation for retina OCT using fully convolutional regression networks. Medical Image Anal. 68: 101856 (2021) - [j25]Yufan He, Aaron Carass, Lianrui Zuo, Blake E. Dewey, Jerry L. Prince:
Autoencoder based self-supervised test-time adaptation for medical image analysis. Medical Image Anal. 72: 102136 (2021) - [j24]Lianrui Zuo, Blake E. Dewey, Yihao Liu, Yufan He, Scott D. Newsome, Ellen M. Mowry, Susan M. Resnick, Jerry L. Prince, Aaron Carass:
Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory. NeuroImage 243: 118569 (2021) - [c108]Shuo Han
MR Slice Profile Estimation by Learning to Match Internal Patch Distributions. IPMI 2021: 108-119 - [c107]Lianrui Zuo
Information-Based Disentangled Representation Learning for Unsupervised MR Harmonization. IPMI 2021: 346-359 - [c106]Shuo Han, Aaron Carass, Michael Schär, Peter A. Calabresi, Jerry L. Prince:
Slice Profile Estimation From 2D MRI Acquisition Using Generative Adversarial Networks. ISBI 2021: 145-149 - [c105]Xiaofeng Liu, Fangxu Xing, Jerry L. Prince, Aaron Carass, Maureen Stone, Georges El Fakhri, Jonghye Woo:
Dual-Cycle Constrained Bijective Vae-Gan For Tagged-To-Cine Magnetic Resonance Image Synthesis. ISBI 2021: 1448-1452 - [c104]Samuel W. Remedios, Shuo Han, Blake E. Dewey, Dzung L. Pham, Jerry L. Prince, Aaron Carass:
Joint Image and Label Self-super-Resolution. SASHIMI@MICCAI 2021: 14-23 - [c103]Jacob C. Reinhold, Aaron Carass, Jerry L. Prince:
A Structural Causal Model for MR Images of Multiple Sclerosis. MICCAI (5) 2021: 782-792 - [c102]Di Liu, Jiang Liu, Yihao Liu, Ran Tao, Jerry L. Prince, Aaron Carass:
Label super resolution for 3D magnetic resonance images using deformable U-net. Medical Imaging: Image Processing 2021 - [c101]Muhan Shao, Aaron Carass, Jiachen Zhuo, Xiao Liang, Dima H. Ghunaim, Maureen L. Stone, Jerry L. Prince:
Dynamic palatogram generation from Cine MRI for normalized speech assessment. Medical Imaging: Image Processing 2021 - [c100]Muhan Shao, Arnold D. Gomez, Jiachen Zhuo, Xiao Liang, Maureen Stone, Aaron Carass, Jerry L. Prince:
Reconstruction and refinement of crossing muscle fibers in the human tongue. Medical Imaging: Image Processing 2021 - [c99]Mallika Singh
Accurate estimation of total intracranial volume in MRI using a multi-tasked image-to-image translation network. Medical Imaging: Image Processing 2021 - [c98]Shangxian L. Wang, Shuo Han, Aaron Carass, Jiachen Zhuo, Steve Roys, Rao P. Gullapalli, Li Jiang, Jerry L. Prince:
Thalamus segmentation using convolutional neural networks. Medical Imaging: Image Processing 2021 - [i12]Xiaofeng Liu, Fangxu Xing, Jerry L. Prince, Aaron Carass, Maureen Stone, Georges El Fakhri, Jonghye Woo:
Dual-cycle Constrained Bijective VAE-GAN For Tagged-to-Cine Magnetic Resonance Image Synthesis. CoRR abs/2101.05439 (2021) - [i11]Jacob C. Reinhold, Aaron Carass, Jerry L. Prince:
A Structural Causal Model for MR Images of Multiple Sclerosis. CoRR abs/2103.03158 (2021) - [i10]Lianrui Zuo, Blake E. Dewey, Aaron Carass, Yihao Liu, Yufan He, Peter A. Calabresi, Jerry L. Prince:
Information-based Disentangled Representation Learning for Unsupervised MR Harmonization. CoRR abs/2103.13283 (2021) - [i9]Shuo Han, Samuel Remedios, Aaron Carass, Michael Schär, Jerry L. Prince:
MR Slice Profile Estimation by Learning to Match Internal Patch Distributions. CoRR abs/2104.00100 (2021) - 2020
- [j23]Shuo Han, Aaron Carass, Yufan He, Jerry L. Prince:
Automatic cerebellum anatomical parcellation using U-Net with locally constrained optimization. NeuroImage 218: 116819 (2020) - [j22]Shuo Han, Yang An, Aaron Carass
Longitudinal analysis of regional cerebellum volumes during normal aging. NeuroImage 220: 117062 (2020) - [j21]Heran Yang
Unsupervised MR-to-CT Synthesis Using Structure-Constrained CycleGAN. IEEE Trans. Medical Imaging 39(12): 4249-4261 (2020) - [c97]Jacob C. Reinhold, Yufan He, Shizhong Han, Yunqiang Chen, Dashan Gao, Junghoon Lee, Jerry L. Prince, Aaron Carass:
Validating Uncertainty in Medical Image Translation. ISBI 2020: 95-98 - [c96]Lianrui Zuo, Blake E. Dewey, Aaron Carass, Yufan He, Muhan Shao, Jacob C. Reinhold, Jerry L. Prince:
Synthesizing Realistic Brain MR Images with Noise Control. SASHIMI@MICCAI 2020: 21-31 - [c95]Shuo Han, Jerry L. Prince, Aaron Carass:
Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors. MLMI@MICCAI 2020: 404-413 - [c94]Yufan He, Aaron Carass, Lianrui Zuo, Blake E. Dewey, Jerry L. Prince:
Self Domain Adapted Network. MICCAI (1) 2020: 437-446 - [c93]Blake E. Dewey, Lianrui Zuo, Aaron Carass, Yufan He, Yihao Liu, Ellen M. Mowry, Scott D. Newsome, Jiwon Oh, Peter A. Calabresi, Jerry L. Prince:
A Disentangled Latent Space for Cross-Site MRI Harmonization. MICCAI (7) 2020: 720-729 - [c92]Yihao Liu, Lianrui Zuo, Aaron Carass, Yufan He, Angeliki Filippatou, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Variational intensity cross channel encoder for unsupervised vessel segmentation on OCT angiography. Medical Imaging: Image Processing 2020: 113130Y - [c91]Jacob C. Reinhold, Yufan He, Shizhong Han, Yunqiang Chen, Dashan Gao, Junghoon Lee, Jerry L. Prince, Aaron Carass:
Finding novelty with uncertainty. Medical Imaging: Image Processing 2020: 113130H - [c90]Yufan He, Aaron Carass, Yihao Liu, Angeliki Filippatou, Bruno M. Jedynak, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Segmenting retinal OCT images with inter-B-scan and longitudinal information. Medical Imaging: Image Processing 2020: 113133C - [c89]Yufan He, Aaron Carass, Yihao Liu, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Adversarial domain adaptation for multi-device retinal OCT segmentation. Medical Imaging: Image Processing 2020: 1131309 - [c88]Shuo Han, Jerry L. Prince, Aaron Carass:
Reflection-equivariant convolutional neural networks improve segmentation over reflection augmentation. Medical Imaging: Image Processing 2020: 1131337 - [i8]Jacob C. Reinhold, Yufan He, Shizhong Han, Yunqiang Chen, Dashan Gao, Junghoon Lee, Jerry L. Prince, Aaron Carass:
Finding novelty with uncertainty. CoRR abs/2002.04626 (2020) - [i7]Jacob C. Reinhold, Yufan He, Shizhong Han, Yunqiang Chen, Dashan Gao, Junghoon Lee, Jerry L. Prince, Aaron Carass:
Validating uncertainty in medical image translation. CoRR abs/2002.04639 (2020) - [i6]Yufan He, Aaron Carass, Lianrui Zuo, Blake E. Dewey, Jerry L. Prince:
Self domain adapted network. CoRR abs/2007.03162 (2020)
2010 – 2019
- 2019
- [c87]Yihao Liu, Aaron Carass, Angeliki Filippatou, Yufan He, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Projection Artifact Suppression For Inner Retina In Oct Angiography. ISBI 2019: 592-596 - [c86]Yufan He, Aaron Carass, Yihao Liu, Bruno M. Jedynak, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Fully Convolutional Boundary Regression for Retina OCT Segmentation. MICCAI (1) 2019: 120-128 - [c85]Shuo Han, Aaron Carass, Jerry L. Prince:
Hierarchical Parcellation of the Cerebellum. MICCAI (3) 2019: 484-491 - [c84]Shuo Han, Yufan He, Aaron Carass, Sarah H. Ying, Jerry L. Prince:
Cerebellum parcellation with convolutional neural networks. Medical Imaging: Image Processing 2019: 109490K - [c83]Lianrui Zuo, Shuo Han, Aaron Carass, Sarah H. Ying, Chiadikaobi U. Onyike, Jerry L. Prince:
Automatic quality control using hierarchical shape analysis for cerebellum parcellation. Medical Imaging: Image Processing 2019: 109490J - [c82]Jacob C. Reinhold, Blake E. Dewey, Aaron Carass, Jerry L. Prince:
Evaluating the impact of intensity normalization on MR image synthesis. Medical Imaging: Image Processing 2019: 109493H - 2018
- [j20]Andrew Lang, Aaron Carass, Bruno M. Jedynak, Sharon D. Solomon, Peter A. Calabresi
Intensity inhomogeneity correction of SD-OCT data using macular flatspace. Medical Image Anal. 43: 85-97 (2018) - [j19]Aaron Carass, Jennifer L. Cuzzocreo, Shuo Han, Carlos R. Hernandez-Castillo, Paul E. Rasser, Melanie Ganz
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. NeuroImage 183: 150-172 (2018) - [c81]Can Zhao
Self super-resolution for magnetic resonance images using deep networks. ISBI 2018: 365-368 - [c80]Yihao Liu, Aaron Carass, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Multi-layer fast level set segmentation for macular OCT. ISBI 2018: 1445-1448 - [c79]Muhan Shao, Aaron Carass, Xiang Li, Blake E. Dewey, Ari M. Blitz, Jerry L. Prince, Lotta Maria Ellingsen
Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2018: 105780F - [c78]Lianrui Zuo, Aaron Carass, Shuo Han, Jerry L. Prince:
Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2018: 105780D - [c77]Sachin Goyal, Can Zhao, Amod Jog, Jerry L. Prince, Aaron Carass:
Improving self super resolution in magnetic resonance images. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2018: 1057814 - [c76]Blake E. Dewey, Can Zhao, Aaron Carass, Jiwon Oh, Peter A. Calabresi, Peter C. M. van Zijl, Jerry L. Prince:
Deep Harmonization of Inconsistent MR Data for Consistent Volume Segmentation. SASHIMI@MICCAI 2018: 20-30 - [c75]Yuta Hiasa, Yoshito Otake, Masaki Takao
Cross-Modality Image Synthesis from Unpaired Data Using CycleGAN - Effects of Gradient Consistency Loss and Training Data Size. SASHIMI@MICCAI 2018: 31-41 - [c74]Muhan Shao, Shuo Han, Aaron Carass, Xiang Li, Ari M. Blitz, Jerry L. Prince, Lotta Maria Ellingsen
Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks. MLCN/DLF/iMIMIC@MICCAI 2018: 79-86 - [c73]Can Zhao
A Deep Learning Based Anti-aliasing Self Super-Resolution Algorithm for MRI. MICCAI (1) 2018: 100-108 - [c72]Heran Yang, Jian Sun, Aaron Carass, Can Zhao
Unpaired Brain MR-to-CT Synthesis Using a Structure-Constrained CycleGAN. DLMIA/ML-CDS@MICCAI 2018: 174-182 - [c71]Aniket A. Tolpadi, Maureen L. Stone, Aaron Carass, Jerry L. Prince, Arnold D. Gomez
Inverse biomechanical modeling via machine learning and synthetic training data. Medical Imaging: Image-Guided Procedures 2018: 1057606 - [c70]Sureerat Reaungamornrat, Aaron Carass, Yufan He, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT. Medical Imaging: Image Processing 2018: 105741B - [c69]Jeffrey Glaister, Muhan Shao, Xiang Li, Aaron Carass, Snehashis Roy
Deformable model reconstruction of the subarachnoid space. Medical Imaging: Image Processing 2018: 1057431 - [i5]Can Zhao, Aaron Carass, Blake E. Dewey, Jerry L. Prince:
Self Super-Resolution for Magnetic Resonance Images using Deep Networks. CoRR abs/1802.09431 (2018) - [i4]Yufan He, Aaron Carass, Bruno M. Jedynak, Sharon D. Solomon, Shiv Saidha, Peter A. Calabresi, Jerry L. Prince:
Topology guaranteed segmentation of the human retina from OCT using convolutional neural networks. CoRR abs/1803.05120 (2018) - [i3]Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro J. Niessen, Nasir M. Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider:
Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions. CoRR abs/1806.02051 (2018) - [i2]Heran Yang, Jian Sun, Aaron Carass, Can Zhao, Junghoon Lee, Zongben Xu, Jerry L. Prince:
Unpaired Brain MR-to-CT Synthesis using a Structure-Constrained CycleGAN. CoRR abs/1809.04536 (2018) - [i1]Jacob C. Reinhold, Blake E. Dewey, Aaron Carass, Jerry L. Prince:
Evaluating the Impact of Intensity Normalization on MR Image Synthesis. CoRR abs/1812.04652 (2018) - 2017
- [j18]Amod Jog, Aaron Carass
Random forest regression for magnetic resonance image synthesis. Medical Image Anal. 35: 475-488 (2017) - [j17]Min Chen
Cross contrast multi-channel image registration using image synthesis for MR brain images. Medical Image Anal. 36: 2-14 (2017) - [j16]Aaron Carass
Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. NeuroImage 148: 77-102 (2017) - [j15]Jeffrey Glaister, Aaron Carass, Tziona NessAiver, Joshua V. Stough, Shiv Saidha, Peter A. Calabresi
Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort. NeuroImage 158: 430-440 (2017) - [c68]Bhavna Josephine Antony
Longitudinal analysis of mouse SDOCT volumes. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2017: 101371H - [c67]Blake E. Dewey, Aaron Carass, Ari M. Blitz
Efficient multi-atlas registration using an intermediate template image. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2017: 101371F - [c66]Jeffrey Glaister, Aaron Carass, Dzung L. Pham, John A. Butman, Jerry L. Prince:
Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2017: 101371D - [c65]Andrew Lang, Aaron Carass, Ava K. Bittner
Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2017: 101371M - [c64]Ipek Oguz, Aaron Carass, Dzung L. Pham, Snehashis Roy
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation. BrainLes@MICCAI 2017: 3-14 - [c63]Aaron Carass, Muhan Shao, Xiang Li, Blake Dewey, Ari Blitz
Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients. Patch-MI@MICCAI 2017: 20-28 - [c62]Can Zhao, Aaron Carass, Junghoon Lee, Amod Jog, Jerry L. Prince:
A Supervoxel Based Random Forest Synthesis Framework for Bidirectional MR/CT Synthesis. SASHIMI@MICCAI 2017: 33-40 - [c61]Jeffrey Glaister, Aaron Carass, Dzung L. Pham, John A. Butman, Jerry L. Prince:
Falx Cerebri Segmentation via Multi-atlas Boundary Fusion. MICCAI (1) 2017: 92-99 - [c60]Yufan He, Aaron Carass, Yeyi Yun, Can Zhao
Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs. FIFI/OMIA@MICCAI 2017: 202-209 - [c59]Can Zhao
Whole Brain Segmentation and Labeling from CT Using Synthetic MR Images. MLMI@MICCAI 2017: 291-298 - [c58]Junghoon Lee, Aaron Carass, Amod Jog, Can Zhao, Jerry L. Prince:
Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning. Medical Imaging: Image Processing 2017: 101331I - 2016
- [j14]Zhen Yang, Chuyang Ye, John A. Bogovic, Aaron Carass
Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease. NeuroImage 127: 435-444 (2016) - [j13]Yuankai Huo
Consistent cortical reconstruction and multi-atlas brain segmentation. NeuroImage 138: 197-210 (2016) - [c57]Andrew Lang, Aaron Carass
Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. ISBI 2016: 197-200 - [c56]Bhavna Josephine Antony
Voxel based morphometry in optical coherence tomography: validation and core findings. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2016: 97880P - [c55]Sayed Mazdak Abulnaga
A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction. Medical Imaging: Computer-Aided Diagnosis 2016: 97852P - [c54]Amod Jog, Aaron Carass
Self Super-Resolution for Magnetic Resonance Images. MICCAI (3) 2016: 553-560 - [c53]Lotta Maria Ellingsen
Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling. Medical Imaging: Image Processing 2016: 97840G - [c52]Yuankai Huo, Aaron Carass
Combining multi-atlas segmentation with brain surface estimation. Medical Imaging: Image Processing 2016: 97840E - [c51]Andrew Lang, Aaron Carass
Combined registration and motion correction of longitudinal retinal OCT data. Medical Imaging: Image Processing 2016: 97840X - [c50]Zhen Yang, Sayed Mazdak Abulnaga
Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization. Medical Imaging: Image Processing 2016: 97840P - [c49]Can Zhao, Aaron Carass
Effects of spatial resolution on image registration. Medical Imaging: Image Processing 2016: 97840Y - [c48]Bhavna Josephine Antony
Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes. Medical Imaging: Image Processing 2016: 97841C - [c47]Ke Li, Chuyang Ye, Zhen Yang, Aaron Carass
Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles. Medical Imaging: Image Processing 2016: 97841H - [c46]Jeffrey Glaister, Aaron Carass
Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors. Medical Imaging: Image Processing 2016: 97843J - [c45]Luoluo Liu, Jeffrey Glaister, Xiaoxia Sun, Aaron Carass
Segmentation of thalamus from MR images via task-driven dictionary learning. Medical Imaging: Image Processing 2016: 97843H - 2015
- [j12]Adriënne M. Mendrik, Koen L. Vincken, Hugo J. Kuijf
MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans. Comput. Intell. Neurosci. 2015: 813696:1-813696:16 (2015) - [j11]Amod Jog, Aaron Carass
MR image synthesis by contrast learning on neighborhood ensembles. Medical Image Anal. 24(1): 63-76 (2015) - [j10]Murat Bilgel
Deformation field correction for spatial normalization of PET images. NeuroImage 119: 152-163 (2015) - [j9]Snehashis Roy
Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation. IEEE J. Biomed. Health Informatics 19(5): 1598-1609 (2015) - [c44]Amod Jog, Aaron Carass
Tree-Encoded Conditional Random Fields for Image Synthesis. IPMI 2015: 733-745 - [c43]Emily K. Swingle, Andrew Lang, Aaron Carass
Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2015: 94170P - [c42]Snehashis Roy
Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions. MLMI 2015: 194-202 - [c41]Andrew Lang, Aaron Carass
Longitudinal graph-based segmentation of macular OCT using fundus alignment. Medical Imaging: Image Processing 2015: 94130M - [c40]Min Chen, Amog Jog, Aaron Carass
Using image synthesis for multi-channel registration of different image modalities. Medical Imaging: Image Processing 2015: 94131Q - [c39]Amod Jog, Aaron Carass
Multi-output decision trees for lesion segmentation in multiple sclerosis. Medical Imaging: Image Processing 2015: 94131C - 2014
- [c38]Chuyang Ye, Aaron Carass, Emi Z. Murano, Maureen L. Stone, Jerry L. Prince:
A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging. BAMBI 2014: 13-24 - [c37]Amod Jog, Aaron Carass, Jerry L. Prince:
Improving magnetic resonance resolution with supervised learning. ISBI 2014: 987-990 - [c36]Amod Jog, Aaron Carass, Dzung L. Pham, Jerry L. Prince:
Random forest FLAIR reconstruction from T1, T2, and PD-weighted MRI. ISBI 2014: 1079-1082 - [c35]Zhen Yang, Shenghua Zhong, Aaron Carass, Sarah H. Ying, Jerry L. Prince:
Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression. MLMI 2014: 68-76 - [c34]Joshua V. Stough, Jeffrey Glaister, Chuyang Ye, Sarah H. Ying, Jerry L. Prince, Aaron Carass
Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification. MICCAI (3) 2014: 169-176 - [c33]Murat Bilgel
Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model. MLMI 2014: 198-206 - [c32]Snehashis Roy
Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation. MLMI 2014: 248-255 - [c31]Snehashis Roy
Example based lesion segmentation. Medical Imaging: Image Processing 2014: 90341Y - [c30]Andrew Lang, Aaron Carass
An adaptive grid for graph-based segmentation in retinal OCT. Medical Imaging: Image Processing 2014: 903402 - [c29]Snehashis Roy
MR to CT registration of brains using image synthesis. Medical Imaging: Image Processing 2014: 903419 - 2013
- [j8]Min Chen, Aaron Carass
Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view. NeuroImage 83: 1051-1062 (2013) - [j7]Bennett A. Landman, John A. Bogovic, Aaron Carass
System for Integrated Neuroimaging Analysis and Processing of Structure. Neuroinformatics 11(1): 91-103 (2013) - [j6]Snehashis Roy
Magnetic Resonance Image Example-Based Contrast Synthesis. IEEE Trans. Medical Imaging 32(12): 2348-2363 (2013) - [c28]Snehashis Roy
Patch based intensity normalization of brain MR images. ISBI 2013: 342-345 - [c27]Amod Jog, Snehashis Roy
Magnetic resonance image synthesis through patch regression. ISBI 2013: 350-353 - [c26]Min Chen, Andrew Lang, Elias Sotirchos
Deformable registration of macular oct using a-mode scan similarity. ISBI 2013: 476-479 - [c25]Zhen Yang, Aaron Carass
Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex. ISBI 2013: 1018-1021 - [c24]Snehashis Roy
Longitudinal intensity normalization in the presence of multiple sclerosis lesions. ISBI 2013: 1384-1387 - [c23]Snehashis Roy
Atlas Based Intensity Transformation of Brain MR Images. MBIA 2013: 51-62 - [c22]Min Chen, Aaron Carass
Voxel-wise displacement as independent features in classification of multiple sclerosis. Medical Imaging: Image Processing 2013: 86690K - [c21]Andrew Lang, Aaron Carass
Segmentation of retinal OCT images using a random forest classifier. Medical Imaging: Image Processing 2013: 86690R - [c20]Snehashis Roy
Longitudinal intensity normalization of magnetic resonance images using patches. Medical Imaging: Image Processing 2013: 86691J - [c19]Amod Jog, Snehashis Roy
Pulse sequence based multi-acquisition MR intensity normalization. Medical Imaging: Image Processing 2013: 86692H - [c18]Zhen Yang, John A. Bogovic, Aaron Carass
Automatic cell segmentation in fluorescence images of confluent cell monolayers using multi-object geometric deformable model. Medical Imaging: Image Processing 2013: 866904 - [c17]Murat Bilgel
Automated anatomical labeling of the cerebral arteries using belief propagation. Medical Imaging: Image Processing 2013: 866918 - 2012
- [j5]Snehashis Roy
Consistent segmentation using a Rician classifier. Medical Image Anal. 16(2): 524-535 (2012) - [c16]Zhen Yang, Aaron Carass
Automatic sulcal curve extraction with MRF based shape prior. ISBI 2012: 418-421 - [c15]Zhen Yang, Aaron Carass
Simultaneous cortical surface labeling and sulcal curve extraction. Medical Imaging: Image Processing 2012: 831414 - [c14]Xinyang Liu, Pierre-Louis Bazin
Topology preserving brain tissue segmentation using graph cuts. MMBIA 2012: 185-190 - 2011
- [j4]Aaron Carass
Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis. NeuroImage 56(4): 1982-1992 (2011) - [c13]Snehashis Roy
A Compressed Sensing Approach for MR Tissue Contrast Synthesis. IPMI 2011: 371-383 - [c12]Snehashis Roy
Compressed sensing based intensity non-uniformity correction. ISBI 2011: 101-104 - [c11]Min Chen, Aaron Carass
Topology preserving automatic segmentation of the spinal cord in magnetic resonance images. ISBI 2011: 1737-1740 - [c10]Min Chen, Aaron Carass
Distance transforms in multi channel MR image registration. Medical Imaging: Image Processing 2011: 79621D - [c9]Snehashis Roy
Intensity inhomogeneity correction of magnetic resonance images using patches. Medical Imaging: Image Processing 2011: 79621F - 2010
- [j3]Madhav Thambisetty, Jing Wan, Aaron Carass
Longitudinal changes in cortical thickness associated with normal aging. NeuroImage 52(4): 1215-1223 (2010) - [j2]Blake C. Lucas, John A. Bogovic, Aaron Carass
The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software. Neuroinformatics 8(1): 5-17 (2010) - [j1]Blake C. Lucas, John A. Bogovic, Aaron Carass
Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software. Neuroinformatics 8(1): 19 (2010) - [c8]Snehashis Roy
MR contrast synthesis for lesion segmentation. ISBI 2010: 932-935 - [c7]Snehashis Roy
Synthesizing MR contrast and resolution through a patch matching technique. Medical Imaging: Image Processing 2010: 76230J
2000 – 2009
- 2009
- [c6]Snehashis Roy
A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images. ISBI 2009: 406-409 - 2008
- [c5]Jing Wan, Aaron Carass
Automated reliable labeling of the cortical surface. ISBI 2008: 440-443 - [c4]Snehashis Roy
Fuzzy c-means with variable compactness. ISBI 2008: 452-455 - [c3]John A. Bogovic, Aaron Carass
Automatically identifying white matter tracts using cortical labels. ISBI 2008: 895-898 - 2007
- [c2]Aaron Carass
A Joint Registration and Segmentation Approach to Skull Stripping. ISBI 2007: 656-659 - 2006
- [c1]Prasanna Anbazhagan, Aaron Carass, Pierre-Louis Bazin, Jerry L. Prince:
Automatic estimation of midsagittal plane and AC-PC alignment on nonrigid registration. ISBI 2006: 828-831
Coauthor Index
Blake Dewey
aka: Blake E. Dewey
aka: Blake E. Dewey
Bruno Jedynak
aka: Bruno M. Jedynak
aka: Bruno M. Jedynak
[j30] [j29] [c138] [c137] [i27] [i25] [j28] [c136] [c135] [c134] [c133] [c132] [c131] [c130] [c129] [c128] [c127] [c126] [c125] [c124] [c123] [c122] [c121] [i24] [i23] [i22] [i21] [i20] [i19] [i18] [j27] [c120] [c119] [c118] [c117] [c116] [c115] [c113] [c112] [c111] [c110] [c109] [i17] [i16] [i14] [i13] [j26] [j25] [j24] [c108] [c107] [c106] [c105] [c104] [c103] [c102] [c101] [c100] [c99] [c98] [i12] [i11] [i10] [i9] [j23] [j22] [j21] [c97] [c96] [c95] [c94] [c93] [c92] [c91] [c90] [c89] [c88] [i8] [i7] [i6] [c87] [c86] [c85] [c84] [c83] [c82] [j20] [j19] [c81] [c80] [c79] [c78] [c77] [c76] [c75] [c74] [c73] [c72] [c71] [c70] [c69] [i5] [i4] [i2] [i1] [j18] [j17] [j15] [c68] [c67] [c66] [c65] [c64] [c63] [c62] [c61] [c60] [c59] [c58] [j14] [j13] [c57] [c56] [c55] [c54] [c53] [c52] [c51] [c50] [c49] [c48] [c47] [c46] [c45] [j11] [j10] [j9] [c44] [c43] [c42] [c41] [c40] [c39] [c38] [c37] [c36] [c35] [c34] [c33] [c32] [c31] [c30] [c29] [j8] [j7] [j6] [c28] [c27] [c26] [c25] [c24] [c23] [c22] [c21] [c20] [c19] [c18] [c17] [j5] [c16] [c15] [c14] [j4] [c13] [c12] [c11] [c10] [c9] [j3] [j2] [j1] [c8] [c7] [c6] [c5] [c4] [c3] [c2] [c1]
Samuel Remedios
aka: Samuel W. Remedios
aka: Samuel W. Remedios
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