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John H. Phan
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2010 – 2019
- 2016
- [c31]John H. Phan, Ryan Hoffman
, Sonal Kothari, Po-Yen Wu, May D. Wang
Integration of multi-modal biomedical data to predict cancer grade and patient survival. BHI 2016: 577-580 - [c30]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A multi-modal graph-based semi-supervised pipeline for predicting cancer survival. BIBM 2016: 184-189 - [i2]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A Multi-Modal Graph-Based Semi-Supervised Pipeline for Predicting Cancer Survival. CoRR abs/1611.05751 (2016) - 2015
- [c29]Cheng Yang, Po-Yen Wu, Li Tong, John H. Phan, May D. Wang
The impact of RNA-seq aligners on gene expression estimation. BCB 2015: 462-471 - [c28]Matt Schwartz, Martin Park, John H. Phan, May D. Wang
Integration of multimodal RNA-seq data for prediction of kidney cancer survival. BIBM 2015: 1591-1595 - [c27]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A semi-supervised method for predicting cancer survival using incomplete clinical data. EMBC 2015: 210-213 - [c26]Hang Wu, John H. Phan, Ajay K. Bhatia, Caitlin A. Cundiff, Bahig M. Shehata, May D. Wang
Detection of blur artifacts in histopathological whole-slide images of endomyocardial biopsies. EMBC 2015: 727-730 - [c25]Ying Sha, John H. Phan, May D. Wang
Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data. EMBC 2015: 6461-6464 - [i1]Hamid Reza Hassanzadeh, John H. Phan, May D. Wang:
A Semi-Supervised Method for Predicting Cancer Survival Using Incomplete Clinical Data. CoRR abs/1509.08888 (2015) - 2014
- [j9]Sonal Kothari, John H. Phan, Todd H. Stokes, Adeboye O. Osunkoya, Andrew N. Young, May D. Wang
Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis. IEEE J. Biomed. Health Informatics 18(3): 765-772 (2014) - [c24]John H. Phan, Sonal Kothari, May D. Wang
omniClassifier: a desktop grid computing system for big data prediction modeling. BCB 2014: 514-523 - [c23]Sahar Harati, John H. Phan, May D. Wang
Investigation of factors affecting RNA-seq gene expression calls. EMBC 2014: 5232-5235 - [c22]Cheng Yang, Po-Yen Wu, John H. Phan, May D. Wang
The impact of RNA-seq alignment pipeline on detection of differentially expressed genes. GlobalSIP 2014: 1376-1379 - 2013
- [j8]Po-Yen Wu, John H. Phan, May D. Wang
Assessing the impact of human genome annotation choice on RNA-seq expression estimates. BMC Bioinform. 14(S-11): S8 (2013) - [j7]Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
Histological image classification using biologically interpretable shape-based features. BMC Medical Imaging 13: 9 (2013) - [j6]Sonal Kothari, John H. Phan, Todd H. Stokes, May D. Wang
Review: Pathology imaging informatics for quantitative analysis of whole-slide images. J. Am. Medical Informatics Assoc. 20(6): 1099-1108 (2013) - [j5]John H. Phan, Andrew N. Young, May Dongmei Wang
omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification. IEEE Trans. Biomed. Eng. 60(12): 3364-3367 (2013) - [c21]Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
Systematic Assessment of RNA-Seq Quantification Tools Using Simulated Sequence Data. BCB 2013: 623 - [c20]Anjaly Poruthoor, John H. Phan, Sonal Kothari, May D. Wang
Exploration of genomic, proteomic, and histopathological image data integration methods for clinical prediction. ChinaSIP 2013: 259-263 - [c19]Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
Benchmarking RNA-Seq quantification tools. EMBC 2013: 647-650 - [c18]Po-Yen Wu, John H. Phan, May D. Wang
An approach for assessing RNA-seq quantification algorithms in replication studies. GENSiPS 2013: 15-18 - 2012
- [j4]Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Briefings Bioinform. 13(4): 430-445 (2012) - [j3]R. Mitchell Parry, John H. Phan, May D. Wang
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BMC Bioinform. 13(S-3): S7 (2012) - [j2]John H. Phan, Chang F. Quo, May Dongmei Wang
Cardiovascular Genomics: A Biomarker Identification Pipeline. IEEE Trans. Inf. Technol. Biomed. 16(5): 809-822 (2012) - [c17]Sonal Kothari, Adeboye O. Osunkoya, John H. Phan, May D. Wang
Biological interpretation of morphological patterns in histopathological whole-slide images. BCB 2012: 218-225 - [c16]Po-Yen Wu, John H. Phan, May D. Wang
The effect of human genome annotation complexity on RNA-Seq gene expression quantification. BIBM Workshops 2012: 712-717 - [c15]Sonal Kothari, John H. Phan, May D. Wang
Scale normalization of histopathological images for batch invariant cancer diagnostic models. EMBC 2012: 4406-4409 - [c14]John H. Phan, Po-Yen Wu, May D. Wang
Improving the flexibility of RNA-Seq data analysis pipelines. GENSiPS 2012: 70-73 - 2011
- [j1]Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, May D. Wang
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts. BMC Bioinform. 12: 383 (2011) - [c13]R. Mitchell Parry, John H. Phan, May D. Wang
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BCB 2011: 29-38 - [c12]Po-Yen Wu, John H. Phan, Fengfeng Zhou
Evaluation of normalization methods for RNA-Seq gene expression estimation. BIBM Workshops 2011: 50-57 - [c11]Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer. BIBM 2011: 422-425 - [c10]Po-Yen Wu, John H. Phan, May D. Wang
Exploring the feasibility of next-generation sequencing and microarray data meta-analysis. EMBC 2011: 7618-7621 - [c9]Sonal Kothari, John H. Phan, Richard A. Moffitt, Todd H. Stokes, Shelby E. Hassberger, Qaiser Chaudry, Andrew N. Young, May D. Wang
Automatic batch-invariant color segmentation of histological cancer images. ISBI 2011: 657-660 - 2010
- [c8]Jaydeep K. Srimani, Po-Yen Wu, John H. Phan, May D. Wang
A distributed system for fast alignment of next-generation sequencing data. BIBM Workshops 2010: 579-584
2000 – 2009
- 2009
- [c7]John H. Phan, Qiqin Yin-Goen, Andrew N. Young, May D. Wang:
Improving the Efficiency of Biomarker Identification Using Biological Knowledge. Pacific Symposium on Biocomputing 2009: 427-438 - 2008
- [c6]John H. Phan, Richard A. Moffitt, Andrea B. Barrett, May D. Wang
Improving Microarray Sample Size Using Bootstrap Data Combination. IMSCCS 2008: 37-44 - 2007
- [c5]John H. Phan, May D. Wang
Estimating Classification Error to Identify Biomarkers in Time Series Expression Data. BIBE 2007: 172-179 - [c4]John H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang
Evolving Biological Behavior in Gene-Based Cellular Simulations. BIBE 2007: 509-516 - 2006
- [c3]John H. Phan, Andrew N. Young, May D. Wang
Selecting Clinically-Driven Biomarkers for Cancer Nanotechnology. EMBC 2006: 3317-3320 - [c2]Todd H. Stokes, John H. Phan, Chang F. Quo, Shuming Nie, May D. Wang
Bio-Nano-Informatics: An Integrated Information Management System for Personalized Oncology. EMBC 2006: 3325-3328 - 2004
- [c1]John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang:
Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. CSB 2004: 474-475
Coauthor Index
aka: May Dongmei Wang
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