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Jan F. Prins
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- affiliation: University of North Carolina at Chapel Hill, Department of Computer Science, NC, USA
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2010 – 2019
- 2017
- [c50]Antón Rey, Francisco D. Igual
, Manuel Prieto-Matías
Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures. ICCS 2017: 2313-2317 - [c49]Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier
An Adaptive Core-Specific Runtime for Energy Efficiency. IPDPS 2017: 947-956 - [c48]Jeffrey Ichnowski
The Economic Case for Cloud-Based Computation for Robot Motion Planning. ISRR 2017: 59-65 - [c47]Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins:
E Pluribus Unum: United States of Single Cells. RECOMB 2017: 400-401 - [c46]Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier
Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control. E2SC@SC 2017: 6:1-6:8 - 2016
- [c45]Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins:
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. RECOMB 2016: 239-240 - [c44]James E. McClure, Mark A. Berrill, Jan F. Prins, Cass T. Miller:
Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows. ISAV@SC 2016: 12-17 - [c43]Jeffrey Ichnowski
Cloud-based Motion Plan Computation for Power-Constrained Robots. WAFR 2016: 96-111 - 2015
- [c42]Sridutt Bhalachandra, Allan Porterfield, Jan F. Prins:
Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing. IPDPS Workshops 2015: 911-918 - 2014
- [j20]James E. McClure, Jan F. Prins, Cass T. Miller
A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems. Comput. Phys. Commun. 185(7): 1865-1874 (2014) - [c41]Jeffrey Ichnowski
Cache-aware asymptotically-optimal sampling-based motion planning. ICRA 2014: 5804-5810 - [c40]James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng:
Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems. IPDPS 2014: 583-592 - 2013
- [j19]Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang
A Robust Method for Transcript Quantification with RNA-Seq Data. J. Comput. Biol. 20(3): 167-187 (2013) - [j18]Stephen L. Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins:
Characterizing and mitigating work time inflation in task parallel programs. Sci. Program. 21(3-4): 123-136 (2013) - [c39]Allan Porterfield, Stephen L. Olivier
Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs. IPDPS Workshops 2013: 884-891 - [c38]Robert E. Overman, Jan F. Prins, Laura A. Miller, Michael L. Minion
Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems. IPDPS Workshops 2013: 1126-1135 - 2012
- [j17]Stephen Olivier
OpenMP task scheduling strategies for multicore NUMA systems. Int. J. High Perform. Comput. Appl. 26(2): 110-124 (2012) - [c37]Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu:
A Robust Method for Transcript Quantification with RNA-seq Data. RECOMB 2012: 127-147 - [c36]Stephen Olivier
Characterizing and mitigating work time inflation in task parallel programs. SC 2012: 65 - 2011
- [j16]Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. Bioinform. 27(19): 2633-2640 (2011) - 2010
- [j15]Yin Hu, Kai Wang, Xiaping He, Derek Y. Chiang
A probabilistic framework for aligning paired-end RNA-seq data. Bioinform. 26(16): 1950-1957 (2010) - [j14]Stephen Olivier
Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs. Int. J. Parallel Program. 38(5-6): 341-360 (2010) - [j13]Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. IEEE Trans. Inf. Technol. Biomed. 14(5): 1137-1143 (2010)
2000 – 2009
- 2009
- [j12]Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. J. Comput. Aided Mol. Des. 23(11): 773-784 (2009) - [j11]Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. J. Comput. Aided Mol. Des. 23(11): 785-797 (2009) - [j10]Michael Gschwind, Fred G. Gustavson, Jan F. Prins:
High Performance Computing with the Cell Broadband Engine. Sci. Program. 17(1-2): 1-2 (2009) - [c35]Stephen Olivier
Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs. IWOMP 2009: 63-78 - 2008
- [j9]James Dinan, Stephen Olivier
A message passing benchmark for unbalanced applications. Simul. Model. Pract. Theory 16(9): 1177-1189 (2008) - [c34]Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. BIBM 2008: 199-206 - [c33]Stephen Olivier
Scalable Dynamic Load Balancing Using UPC. ICPP 2008: 123-131 - [c32]Qi Zhang, Wei Wang
Genotype Sequence Segmentation: Handling Constraints and Noise. WABI 2008: 271-283 - 2007
- [c31]James Dinan, Stephen Olivier
Dynamic Load Balancing of Unbalanced Computations Using Message Passing. IPDPS 2007: 1-8 - [c30]Stephen Olivier
Porting the GROMACS Molecular Dynamics Code to the Cell Processor. IPDPS 2007: 1-8 - [c29]Jinze Liu, Qi Zhang, Wei Wang
PoClustering: Lossless Clustering of Dissimilarity Data. SDM 2007: 557-562 - 2006
- [j8]Jun Huan, Jan F. Prins, Wei Wang
Local Structure Comparison of Proteins. Adv. Comput. 68: 180-255 (2006) - [c28]Jinze Liu, Qi Zhang, Wei Wang
Clustering pair-wise dissimilarity data into partially ordered sets. KDD 2006: 637-642 - [c27]Stephen Olivier
UTS: An Unbalanced Tree Search Benchmark. LCPC 2006: 235-250 - [c26]Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang
Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. SDM 2006: 407-418 - 2005
- [j7]Jun Huan, Deepak Bandyopadhyay, Wei Wang
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. J. Comput. Biol. 12(6): 657-671 (2005) - [c25]Jinze Liu, Susan Paulsen, Wei Wang
Mining Approximate Frequent Itemsets from Noisy Data. ICDM 2005: 721-724 - 2004
- [c24]Jun Huan, Wei Wang, Jan F. Prins, Jiong Yang:
SPIN: mining maximal frequent subgraphs from graph databases. KDD 2004: 581-586 - [c23]Jun Huan, Wei Wang, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha:
Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. Pacific Symposium on Biocomputing 2004: 411-422 - [c22]Jun Huan, Wei Wang
Mining protein family specific residue packing patterns from protein structure graphs. RECOMB 2004: 308-315 - 2003
- [c21]Jun Huan, Jan F. Prins, Wei Wang
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. CSB 2003: 484-485 - [c20]Jun Huan, Wei Wang, Jan F. Prins:
Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. ICDM 2003: 549-552 - [c19]Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan F. Prins, William W. Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng:
Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures. LCPC 2003: 194-208 - 2001
- [e2]Samuel P. Midkiff
Languages and Compilers for Parallel Computing, 13th International Workshop, LCPC 2000, Yorktown Heights, NY, USA, August 10-12, 2000, Revised Papers. Lecture Notes in Computer Science 2017, Springer 2001, ISBN 3-540-42862-3 [contents] - 2000
- [j6]Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills:
A Design Methodology for Data-Parallel Applications. IEEE Trans. Software Eng. 26(4): 293-314 (2000) - [c18]James Riely
Flattening Is an Improvement. SAS 2000: 360-376
1990 – 1999
- 1999
- [j5]Jan F. Prins, Jan Hermans, Geoffrey Mann, Lars S. Nyland, Martin Simons:
A virtual environment for steered molecular dynamics. Future Gener. Comput. Syst. 15(4): 485-495 (1999) - [j4]Jan F. Prins, Siddhartha Chatterjee, Martin Simons:
Irregular computations in Fortran - expression and implementation strategies. Sci. Program. 7(3-4): 313-326 (1999) - [e1]Siddhartha Chatterjee, Jan F. Prins, Larry Carter, Jeanne Ferrante, Zhiyuan Li, David C. Sehr, Pen-Chung Yew:
Languages and Compilers for Parallel Computing, 11th International Workshop, LCPC'98, Chapel Hill, NC, USA, August 7-9, 1998, Proceedings. Lecture Notes in Computer Science 1656, Springer 1999, ISBN 3-540-66426-2 [contents] - 1998
- [c17]Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang:
Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution. IRREGULAR 1998: 356-365 - [c16]Jan F. Prins, Siddhartha Chatterjee, Martin Simons:
Expressing Irregular Computations in Modern Fortran Dialects. LCR 1998: 1-16 - 1997
- [j3]Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang:
Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques. J. Parallel Distributed Comput. 47(2): 125-138 (1997) - [c15]Rickard E. Faith, Lars S. Nyland, Jan F. Prins:
KHEPERA: A System for Rapid Implementation of Domain Specific Languages. DSL 1997 - 1996
- [c14]Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner:
A Refinement Methodology for Developing Data-Parallel Applications. Euro-Par, Vol. I 1996: 145-150 - 1995
- [c13]Daniel W. Palmer, Jan F. Prins, Siddhartha Chatterjee, Rickard E. Faith:
Piecewise Execution of Nested Data-Parallel Programs. LCPC 1995: 346-361 - 1994
- [c12]Steve Goddard, Subodh Kumar, Jan F. Prins:
Connected components algorithms for mesh-connected parallel computers. Parallel Algorithms 1994: 43-58 - [c11]Allen Goldberg, Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, James Riely
Specification and Development of Parallel Algorithms with the Proteus System. Specification of Parallel Algorithms 1994: 383-399 - 1993
- [c10]Jan F. Prins, Daniel W. Palmer:
Transforming High-Level Data-Parallel Programs into Vector Operations. PPoPP 1993: 119-128 - 1992
- [c9]Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif:
Prototyping N-Body Simulation in Proteus. IPPS 1992: 476-482 - [c8]William L. Hightower, Jan F. Prins, John H. Reif:
Implementations of Randomized Sorting on Large Parallel Machines. SPAA 1992: 158-167 - 1991
- [c7]Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, Robert A. Wagner:
Prototyping parallel and distributed programs in Proteus. SPDP 1991: 26-34
1980 – 1989
- 1989
- [j2]Susan Horwitz, Jan F. Prins, Thomas W. Reps:
Integrating Noninterfering Versions of Programs. ACM Trans. Program. Lang. Syst. 11(3): 345-387 (1989) - 1988
- [c6]Susan Horwitz, Jan F. Prins, Thomas W. Reps:
Integrating Non-Interfering Versions of Programs. POPL 1988: 133-145 - [c5]Susan Horwitz, Jan F. Prins, Thomas W. Reps:
On the Adequacy of Program Dependence Graphs for Representing Programs. POPL 1988: 146-157 - [c4]Thomas W. Reps, Susan Horwitz, Jan F. Prins:
Support for Integrating Program Variants in an Environment for Programming in the Large. SCM 1988: 197-216 - 1987
- [b1]Jan F. Prins:
Partial Implementations in Program Derivation. Cornell University, USA, 1987 - [j1]David Gries
McLaren's Masterpiece. Sci. Comput. Program. 8(2): 139-145 (1987) - 1985
- [c3]David Gries
A new notion of encapsulation. SLIPE 1985: 131-139 - 1982
- [c2]Jan F. Prins:
Automated testing in APL - an application of exception handling. APL 1982: 260-264 - [c1]Dean Jacobs, Jan F. Prins, Peter Siegel, Kenneth Wilson:
Monte Carlo techniques in code optimization. MICRO 1982: 143-148
Coauthor Index
aka: Stephen L. Olivier
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