Prepare for 1.1.1 release (#264)

* Alphabetize author list.

* Add Amelie as a coauthor of the software.

* Add 1.1.1 release notes.

* Update CITATION.cff

* Update docs/changes.md

Prepare for 1.1.0 release (#228)

Prepare for 1.1.0 release.

Prepare for 1.0.1 release (#215)

Prepare for 1.0.1 release.

Switch hbcd pipeline back to Chen (#202)

* check the right file for bundle names

* change hbcd_scalar_maps to Chen

Support output spaces to arbitrary templates and cohorts (#184)

* seems to work

* remove restriction

Prepare for 1.0.0rc1 release (#178)

* Create CITATION.cff

* Use consistent name.

* Add info on running tests locally.

* Add release notes for 1.0.0rc1.

* Remove unnecessary Zenodo file.

[FIX] Fix how bundles to be tracked are selected for DSIstudio autotr…

…ack (#121)

* update get_bundles function to fix how bundles to be tracked are selected

* fix formatting

* trigger CI build

[FIX] mif2fib (#116)

* fix mif2fib to use --fib argument

* add Amelie to zenodo

[ENH] Update AMICO (#115)

* update amico so we don't need spams

* update image for circleci

* update amico file names and threading

Draft pre-init ingression (#102)

* Draft pre-init ingression.

* Add input_dir.

* Update pyproject.toml

* Update pyproject.toml

* Update parser.py

* Update pyproject.toml

* Update parser.py

* Update parser.py

* Update parser.py

* Update parser.py

* add external ingression

* linting

* linting: the sequel

* update qsirecon_build

* use acres for loading data

* update i2q version

* update i2q for acres dependency

* repin nilearn

* Update parser.py

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Co-authored-by: Steven Meisler <smeisler@g.harvard.edu>
Co-authored-by: Steven Meisler <smeisler13@gmail.com>