Added

Initial release of nf-core/createtaxdb, created with the nf-core template.

Adds database building support for the following tools:

• (Primarily) nucleotide based
  • Bracken (added by @alxndrdiaz)
  • Centrifuge (added by @jfy133)
  • ganon (added by @jfy133)
  • KMCP (added by @alxndrdiaz)
  • KrakenUniq (added by @jfy133)
  • Kraken2 (added by @alxndrdiaz)
  • MALT (added by @jfy133 and @LilyAnderssonLee)
• (Primarily) protein based
  • DIAMOND (added by @jfy133)
  • Kaiju (added by @jfy133)

Additional optimisation when running with very large number of genomes by @BioWilko.

Fixed

Dependencies

Deprecated