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Issues list

check out extensions for input files bug Something isn't working
#256 opened Jan 25, 2024 by maxulysse
3
Allow a prepared ENA metadata samplesheet as input enhancement Improvement for existing functionality
#77 opened Mar 7, 2022 by Midnighter
1
add --save_merged_fastq for merging technical repeats to fetchngs enhancement Improvement for existing functionality
#95 opened Jun 7, 2022 by ojziff
5
Can SRA responses be trapped and reported in a user-friendly manner? enhancement Improvement for existing functionality
#108 opened Jul 14, 2022 by telatin
1
Use ffq to fetch id metadata enhancement Improvement for existing functionality
#110 opened Jul 21, 2022 by drpatelh
@robsyme
eutils rate limits exceeded (with relatively small input set of accessions) bug Something isn't working
#117 opened Oct 13, 2022 by adf-ncgr
4
Deal with accessions with non-existing files enhancement Improvement for existing functionality
#139 opened Mar 24, 2023 by bmlab-sg 1.10.0
@drpatelh
6
Add compatibility with sarek samplesheet enhancement Improvement for existing functionality
#196 opened Sep 21, 2023 by FriederikeHanssen
SRAtools download seems to insert paired-end suffix into workdir path bug Something isn't working
#221 opened Oct 16, 2023 by dmalzl 1.13.0
1
6
FEAT: Pass scientific name as input to download the data
#235 opened Nov 2, 2023 by maxulysse
Check if running offline enhancement Improvement for existing functionality
#18 opened Jun 29, 2021 by drpatelh
1
Use nf-test for input validation enhancement Improvement for existing functionality
#254 opened Jan 18, 2024 by drpatelh
Add ability to download more than 2 FastQ files via FTP and Aspera enhancement Improvement for existing functionality
#260 opened Jan 30, 2024 by drpatelh
3
Merge technical replicates (SRR1 + SRR2 -> SRX) enhancement Improvement for existing functionality
#270 opened Feb 6, 2024 by millerh1
wget host address error bug Something isn't working
#291 opened Feb 23, 2024 by mniederhuber
9
SRA file links deprecated bug Something isn't working
#301 opened Mar 7, 2024 by tiendu
3
Support for GSA accessions enhancement Improvement for existing functionality
#313 opened May 30, 2024 by millerh1
DDBJ study ids (DRP123456) do not map correctly bug Something isn't working
#314 opened Jul 1, 2024 by awalsh17
Support for CNBG enhancement Improvement for existing functionality
#315 opened Jul 1, 2024 by nathaniel-mahieu
SRATOOLS_FASTERQDUMP failing due to missing fastq file bug Something isn't working
#317 opened Jul 24, 2024 by edg1983
11
Update some modeles for TES compliance bug Something isn't working
#318 opened Sep 13, 2024 by vsmalladi
1
@vsmalladi
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