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Fetching from the European Genome-Phenome Archive

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#360 In nf-core/fetchngs;

· UtaHar opened on Oct 23, 2025

Add direct AWS download method

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#354 In nf-core/fetchngs;

· tanaes opened on Aug 14, 2025

Add <code>fastq-dl</code> as download method

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#352 In nf-core/fetchngs;

· camlloyd opened on Aug 3, 2025

ERROR ~ Error executing process &gt; 'NFCORE_FETCHNGS:SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS (ncbi-settings)'

bugSomething isn't workingSomething isn't working

Status: Open.

#351 In nf-core/fetchngs;

· JuriBeretta opened on Jul 24, 2025

ERROR ~ Error executing process &gt; 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP (1)'

bugSomething isn't workingSomething isn't working

Status: Open.

#346 In nf-core/fetchngs;

· Luke-ebbis opened on May 12, 2025

·  

1.13.0

Add support for cloud platform

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#345 In nf-core/fetchngs;

· Zhenghongc opened on May 8, 2025

Add xsra support

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

Enhancement

#344 In nf-core/fetchngs;

· edmundmiller opened on May 1, 2025

Partition error on SLURM only with fetchngs -

bugSomething isn't workingSomething isn't working

Status: Open.

#343 In nf-core/fetchngs;

· DollyCM opened on Apr 9, 2025

·  

1.13.0

Fetchngs fails with error: terminated with an error exit status (1) -- Execution is retried (1)

bugSomething isn't workingSomething isn't working

Status: Open.

#342 In nf-core/fetchngs;

· kanekalla opened on Mar 26, 2025

fetchngs test fails

Status: Open.

#336 In nf-core/fetchngs;

· mjfi2sb3 opened on Feb 6, 2025

·  

1.13.0

fasterq-dump =&gt; disk: local-ssd

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#332 In nf-core/fetchngs;

· nick-youngblut opened on Jan 11, 2025

·  

1.13.0

Incorrect MD5 checksums being used for some files

bugSomething isn't workingSomething isn't working

Status: Open.

#331 In nf-core/fetchngs;

· tanaes opened on Jan 9, 2025

·  

1.13.0