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33 changes: 17 additions & 16 deletions CHANGELOG.md
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Expand Up @@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.2 - Bouncy Basenji [2024-09-11]
## v1.2 - Bouncy Basenji [2024-10-03]

### `Added`

Expand All @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#508](https://github.com/nf-core/taxprofiler/pull/508) Add `nanoq` as a filtering tool for nanopore reads (added by @LilyAnderssonLee)
- [#511](https://github.com/nf-core/taxprofiler/pull/511) Add `porechop_abi` as an alternative adapter removal tool for long reads nanopore data (added by @LilyAnderssonLee)
- [#512](https://github.com/nf-core/taxprofiler/pull/512) Update all tools to the latest version and include nf-test (updated by @LilyAnderssonLee & @jfy133)
- [#537](https://github.com/nf-core/taxprofiler/pull/537) Update the module `motus/merge` to the latest version (Updated by @sofstam & @LilyAnderssonLee)

### `Fixed`

Expand All @@ -25,21 +26,21 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Dependencies`

| Tool | Previous version | New version |
| ------------- | ---------------- | ----------- |
| bbmap | 39.01 | 39.06 |
| bowtie2 | 2.4.4 | 2.5.2 |
| bracken | 2.7 | 2.9 |
| diamond | 2.0.15 | 2.1.8 |
| ganon | 1.5.1 | 2.0.0 |
| kraken2 | 2.1.2 | 2.1.3 |
| krona | 2.8 | 2.8.1 |
| megan | 6.24.20 | 6.25.9 |
| metaphlan | 4.0.6 | 4.1.1 |
| minimap2 | 2.24 | 2.28 |
| motus/profile | 3.0.3 | 3.1.0 |
| multiqc | 1.21 | 1.25 |
| samtools | 1.17 | 1.20 |
| Tool | Previous version | New version |
| --------- | ---------------- | ----------- |
| bbmap | 39.01 | 39.06 |
| bowtie2 | 2.4.4 | 2.5.2 |
| bracken | 2.7 | 2.9 |
| diamond | 2.0.15 | 2.1.8 |
| ganon | 1.5.1 | 2.0.0 |
| kraken2 | 2.1.2 | 2.1.3 |
| krona | 2.8 | 2.8.1 |
| megan | 6.24.20 | 6.25.9 |
| metaphlan | 4.0.6 | 4.1.1 |
| minimap2 | 2.24 | 2.28 |
| motus | 3.0.3 | 3.1.0 |
| multiqc | 1.21 | 1.25 |
| samtools | 1.17 | 1.20 |

### `Deprecated`

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2 changes: 1 addition & 1 deletion modules.json
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},
"motus/merge": {
"branch": "master",
"git_sha": "e743b2dea725bcfc4b76a209981808987332013a",
"git_sha": "3cf419b5480c5ca8893f5ea6e1746d2b3a7c326d",
"installed_by": ["modules"]
},
"motus/profile": {
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22 changes: 20 additions & 2 deletions modules/nf-core/motus/merge/main.nf

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71 changes: 44 additions & 27 deletions modules/nf-core/motus/merge/meta.yml

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89 changes: 89 additions & 0 deletions modules/nf-core/motus/merge/tests/main.nf.test

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63 changes: 63 additions & 0 deletions modules/nf-core/motus/merge/tests/main.nf.test.snap

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2 changes: 2 additions & 0 deletions modules/nf-core/motus/merge/tests/tags.yml

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