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Fix bug for kraken2/bracken in multiqc #616

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Merged
merged 8 commits into from
Jul 2, 2025
Merged

Fix bug for kraken2/bracken in multiqc #616

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3ea8fc2
Fix bug for kraken2/bracken in multiqc
sofstam Jun 5, 2025
8970f38
Revert "Fix bug for kraken2/bracken in multiqc"
jfy133 Jun 26, 2025
d8aee87
Move Bracken long read filtering upstream
jfy133 Jun 26, 2025
2517bb6
Move filtering to prior kraken2 execution
jfy133 Jun 26, 2025
48f2206
Merge branch 'dev' into fix_bracken_nanopore
jfy133 Jun 26, 2025
3321e7c
Update CHANGELOG.md
sofstam Jul 1, 2025
07fd4d2
Update CHANGELOG.md
sofstam Jul 2, 2025
7c93640
[automated] Fix code linting
nf-core-bot Jul 2, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#602](https://github.com/nf-core/taxprofiler/pull/600) Fixed a typo in the run-merging table example in usage.md (❤️ to @ilight1542 for reporting and fixed by @jfy133)
- [#592](https://github.com/nf-core/taxprofiler/pull/592) improved JSON schema for better validation (by @microlei)
- [#604](https://github.com/nf-core/taxprofiler/pull/604) KrakenUniq no longer fails due to pathname splitting during batching when only single sample supplied (by @AlexHoratio)
- [#612](https://github.com/nf-core/taxprofiler/pull/616) Fix bug with bracken results being shown in MuktiQC for long read data every if bracken not supported for long reads (added by @jfy133 and @sofstam )

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