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@VCCRI Victor Chang Cardiac Research Institute

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    65 repositories

    • NDD_multiomic_study_2025

      Public
      A 2025 study investigating the link between NDD and CHD using multi-omic methods
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • LAMA

      Public
      Automatic phenotyping tool for 3D images
      Python
      •
      Other
      •6•0•0•0•Updated Sep 1, 2025Sep 1, 2025

    • Ularcirc

      Public
      An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
      rna-seqrna-seq-analysiscircular-rnasequencing-rnasplicing-visualizationsplicing-analysesbacksplicingcircrna
      R
      •
      GNU General Public License v3.0
      •8•17•7•0•Updated Aug 14, 2025Aug 14, 2025

    • ShinyCell2

      Public
      ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.
      R
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • VSCode-DevContainer-dockerfile

      Public
      Initiate a VS Code dev container from a dockerfile
      dockerdockerfiledevopsdevelopmentdevcontainer
      Dockerfile
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • KICA

      Public
      KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells
      MATLAB
      •0•1•0•0•Updated May 5, 2025May 5, 2025

    • variant_calling_and_annotation_pipeline

      Public
      Scripts to call, annotate and analyse variants for multiple samples of whole genome sequencing (WGS)
      Shell
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 5, 2025May 5, 2025

    • AZ-container-apps-practice

      Public
      Python
      •0•0•0•1•Updated Mar 22, 2025Mar 22, 2025

    • ShinyCell

      Public
      Shiny Interactive Web Apps for Single-Cell Data
      R
      •
      GNU General Public License v3.0
      •63•0•0•1•Updated Feb 28, 2025Feb 28, 2025

    • kic_data_analyser

      Public
      MATLAB
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • LQTS-BB-Hons24

      Public
      LQTS BB Honours Project 2024 (itak1): Holter feature detection, heatmap and paired analysis of Holter ECGs
      MATLAB
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • Spliceogen

      Public
      Java
      •2•4•0•0•Updated Jul 21, 2024Jul 21, 2024

    • CAPS

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 12, 2024Jun 12, 2024

    • MetaDenovo

      Public
      MetaDenovo : An automated framework to detect de novo mutations from whole genome trio data using cloud computing technology.
      WDL
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 28, 2024May 28, 2024

    • SCN5A_SyncroPatch

      Public
      MATLAB
      •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • DCM_polygenic_study_2024

      Public
      A 2024 study on polygenic risk scores and familial inheritance of dilated cardiomyopathy
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • sSNVs

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 21, 2024Jan 21, 2024

    • shinylive

      Public
      A guide for deploying Shinylive Python application into Github Pages
      HTML
      •24•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • FibroblastIntegration

      Public
      Code related to the integration analysis of cardiac fibroblasts
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Nov 14, 2023Nov 14, 2023

    • CompanyPortal

      Public
      Company-Portal-Icon
      0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • SpliceSM

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • TrioSim

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 18, 2023Jul 18, 2023

    • FlowGrid

      Public
      Jupyter Notebook
      •
      MIT License
      •3•10•1•2•Updated Jul 6, 2023Jul 6, 2023

    • Sierra

      Public
      Discover differential transcript usage from polyA-captured single cell RNA-seq data
      alternative-splicingscrna-seqisoformsalternative-polyadenylationsierra
      R
      •
      GNU General Public License v3.0
      •18•51•22•0•Updated Jun 29, 2023Jun 29, 2023

    • ShinyCell-Docker

      Public
      Shiny Interactive Web Apps for Single-Cell Data
      R
      •
      GNU General Public License v3.0
      •63•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • SyncroPatch-Back-end-Analysis-Code

      Public
      Python
      •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • vpv

      Public
      Volumetric viewer
      Python
      •
      Other
      •2•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • azure-nextflow-cipa

      Public
      Nextflow
      •1•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • azure-nextflow

      Public
      automate azure batch deployment
      Rust
      •
      MIT License
      •4•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • cipa_master_training_docker

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023