Repositories list

• hivdb-cms

  Public
  Static CMS data source for hivdb.stanford.edu

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•3•Updated Sep 26, 2025Sep 26, 2025

• study_metadata

  Public
  Fetch pub med

  Python

  •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• icosa

  Public
  The common library used by the websites created by HIVDB team

  JavaScript

  •

  MIT License

  •0•5•1•1•Updated Aug 31, 2025Aug 31, 2025

• hivdb-DTG

  Public
  Python

  •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

• clinviro

  Public
  An open source Laboratory Information Management System for HIV genotypic resistance test for laboratories

  JavaScript

  •

  GNU General Public License v3.0

  •5•8•0•10•Updated Aug 18, 2025Aug 18, 2025

• sierra

  Public
  HIVDB Genotypic Resistance Interpretation Program

  Java

  •

  GNU General Public License v3.0

  •8•19•13•0•Updated Aug 16, 2025Aug 16, 2025

• hivfacts

  Public
  Structured knowledge base of HIV-1/HIV-2.

  Java

  •

  The Unlicense

  •1•9•1•1•Updated Aug 16, 2025Aug 16, 2025

• codfreq

  Public
  FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

  hivngs-pipelinesars-cov-2

  Python

  •

  MIT License

  •3•14•8•2•Updated Aug 12, 2025Aug 12, 2025

• post-align

  Public
  A post alignment toolkit for refining pairwise/multiple alignment sequences.

  Python

  •1•4•3•1•Updated Aug 12, 2025Aug 12, 2025

• sierra-graphql

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• sierra-core

  Public
  Core code of Sierra Project.

  Java

  •

  GNU General Public License v3.0

  •1•1•3•1•Updated Jul 26, 2025Jul 26, 2025

• sierra-client

  Public
  HIVdb webservice client

  Python

  •

  MIT License

  •5•12•5•1•Updated Jul 22, 2025Jul 22, 2025

• GenBankRefs

  Public
  Python

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• Envelope

  Public
  gp120, gp41 files and code

  Python

  •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• chiro-cms

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•2•2•Updated Oct 29, 2024Oct 29, 2024

• chatpaper

  Public
  HTML

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• genbank_seq_download

  Public
  Python

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• covid-drdb-payload

  Public
  A relational database of SARS-CoV-2 resistance data.

  sars-cov-2covid-19-datacovid-19-api+ 1covid-19

  Creative Commons Attribution Share Alike 4.0 International

  •9•7•122•0•Updated Aug 21, 2024Aug 21, 2024

• covid-drdb-reports

  Public
  HTML

  •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• chat_HIVDB_paper

  Public
  Python

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• genbank_submission_tool

  Public archive
  Python

  •

  The Unlicense

  •2•1•0•0•Updated Jun 24, 2024Jun 24, 2024

• sgsdb

  Public
  Scripts to generate SGS database

  Python

  •

  MIT License

  •0•0•0•6•Updated Jun 17, 2024Jun 17, 2024

• sierra-hbv

  Public
  Stanford University Sierra Program for Hepatitis B

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• poliopoly

  Public
  Shell

  •

  MIT License

  •1•2•0•0•Updated Mar 21, 2024Mar 21, 2024

• HBV-alignment

  Public
  HBV analysis

  Python

  •0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

• covid-drdb

  Public
  Python

  •

  MIT License

  •0•2•11•0•Updated Dec 16, 2023Dec 16, 2023

• aapcnt-previewer

  Public
  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Oct 4, 2023Oct 4, 2023

• polio-mutations

  Public
  HTML

  •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

• sierra-sars2

  Public
  covid-19sars-cov-2

  Java

  •

  GNU General Public License v3.0

  •0•3•6•1•Updated May 23, 2023May 23, 2023

• chiro-frontend

  Public
  Coronavirus frontend, CoV-Rx-DB,

  JavaScript

  •1•0•10•4•Updated Apr 6, 2023Apr 6, 2023