Repositories list

• MSE485-jupyter-notebooks

  Public
  Jupyter Notebooks for MSE 485 Atomistic Scale Simulations

  Jupyter Notebook

  •0•1•0•0•Updated Oct 3, 2025Oct 3, 2025

• hoomd-blue

  Public
  Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •150•0•0•1•Updated Sep 29, 2025Sep 29, 2025

• cubic_unit_cells

  Public
  Simulation and analysis scripts for cubic unit cells project

  Python

  •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• martini3

  Public
  Martini3 package for hoomd blue simulation

  Python

  •1•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• atomistic-scale-simulations

  Public
  Material for atomistic scale simulation class

  TeX

  •0•2•0•2•Updated Sep 8, 2025Sep 8, 2025

• azplugins

  Public
  A HOOMD-blue component for soft matter simulations.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •16•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• bent_membranes

  Public
  Example Workflow for Simulation of Bent Membranes

  Python

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• .github

  Public
  TeX

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• NNAssistedRigidBodyMD

  Public
  C++

  •0•2•0•0•Updated Feb 29, 2024Feb 29, 2024