Pyranges: a Python framework for ultrafast sequence interval operations

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Use RMarkdown to generate PDF Conference Posters via HTML

Plot structural variant signals from many BAMs and CRAMs

Code and supplemental material for Statistical Thinking from Scratch

A bunch of lints to catch common mistakes and improve your Rust code. Book: https://doc.rust-lang.org/clippy/

Analyzing RNA-Seq with approximate likelihood

Make Complex Heatmaps

Near-optimal RNA-Seq quantification

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

Learn regex the easy way

Understand your transcriptome assembly

QuantEval is an analysis pipeline which evaluate the reliability of quantification tools.

The second version of the Kraken taxonomic sequence classification system

another book on data science

Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, …

🚄 An oh-my-zsh shell theme based on the Powerline Vim plugin

Data and code behind the articles and graphics at FiveThirtyEight

Population genetics notes

Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.