An open-source AI agent that brings the power of Gemini directly into your terminal.

Structural variant and indel caller for mapped sequencing data

C++ multi-dimensional labeled arrays and dataframe based on xtensor

C++ tensors with broadcasting and lazy computing

Genome modeling and design across all domains of life

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

🧬 gget enables efficient querying of genomic reference databases

Browser bookmarks for your command line

Your CLI home video recorder 📼

Machine Learning with R, Fourth Edition- published by Packt

A conda-forge distribution.

Structural variant toolkit for VCFs

Python library to handle Gene Ontology (GO) terms

A user-friendly command-line interface for the ZARP RNA-seq analysis workflow

The Zavolab Automated RNA-seq Pipeline

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

Modeling of time series data for CRISPR KO experiments

mlpack: a fast, header-only C++ machine learning library

lumpy: a general probabilistic framework for structural variant discovery

Structural variation and indel detection by local assembly

simuG: a general-purpose genome simulator

STAR-Fusion codebase

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A monitor of resources

A curated list of awesome nanopore analysis tools.

Vifm is a file manager with curses interface, which provides Vim-like environment for managing objects within file systems, extended with some useful ideas from mutt.

Source code and solutions of exercises to The C Programming Language 2nd Edition by Brian W. Kernighan and Dennis M. Ritchie

[deprecated] 🧬 Python API to fetch gnomAD data

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

Bioinformatics data analysis and visualization toolkit