Stars
The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.
PyTorch extensions for high performance and large scale training.
Flash Attention in ~100 lines of CUDA (forward pass only)
Collection of neural network activation function kernels for Triton Language Compiler by OpenAI
This repository hosts code for converting the original MLP Mixer models (JAX) to TensorFlow.
An All-MLP solution for Vision, from Google AI
Development repository for the Triton language and compiler
jax-triton contains integrations between JAX and OpenAI Triton
DeepCrime - Mutation Testing Tool for Deep Learning Systems
A library that includes Keras3 layers, blocks and models with pretrained weights, providing support for transfer learning, feature extraction, and more.
This is a port of Mistral-7B model in JAX
Training small GPT-2 style models using Kolmogorov-Arnold networks.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
De novo genome assembler for long uncorrected reads
Bioinformatics with Python Cookbook, Third Edition
Cancer Data Science's go to place for excellent genomics tools and packages
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
Learning to untangle genome assembly with graph neural networks.
[THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble https://github.com/broadinstitute/viral-phylo https://github…
Tools for fast and flexible genome assembly scaffolding and improvement
Python library to facilitate genome assembly, annotation, and comparative genomics
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)