Tool for demultiplexing Nanopore barcode sequence data

Estimate metagenomic coverage and sequence diversity

Nanopore Plasmid Sequencing

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

🌠 Manage your shell commands.

Reference-free clustering and consensus forming of long-read amplicon sequencing

k-mer similarity metrics for two fastx files

A complete pipeline for metagenomic analysis

Graph-based assembly phasing

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

bioinformatics toolkit in rust

A htmlwidgets implementation of Handsontable.js

Unison file synchronizer

Analysis of sequencing error profile for long read data.

Bact-Builder: Microbial de novo genome assembly pipeline

diploid SNV caller for error-prone reads

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

A FASTA/FASTQ format parser library

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Time Machine style backup with rsync.

A set of tools to analyse the output from TraDIS analyses

Aggregate results from bioinformatics analyses across many samples into a single report.

Code and files for the main nf-core website.

A DSL for data-driven computational pipelines

Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul

HMMER: biological sequence analysis using profile HMMs