Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Call and score variants from WGS/WES of rare disease patients.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA-seq analysis pipeline for detection of gene-fusions

Nanopore demultiplexing, QC and alignment pipeline

Precision HLA typing from next-generation sequencing data

ChIP-seq peak-calling, QC and differential analysis pipeline.

Converts bam or cram files to fastq format and does quality control.

ATAC-seq peak-calling and QC analysis pipeline

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Conda recipes for the bioconda channel.

Aggregate results from bioinformatics analyses across many samples into a single report.

Guess which adapter was used in an NGS sequencing run