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freesurfer Public
Forked from freesurfer/freesurferNeuroimaging analysis and visualization suite
C++ Other UpdatedAug 13, 2025 -
igneous Public
Forked from seung-lab/igneousScalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Python GNU General Public License v3.0 UpdatedJul 10, 2025 -
ITK Public
Forked from InsightSoftwareConsortium/ITKInsight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…
C++ Apache License 2.0 UpdatedJun 19, 2025 -
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cloud-volume Public
Forked from seung-lab/cloud-volumeRead and write Neuroglancer datasets programmatically.
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 12, 2025 -
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hoa-tools Public
Forked from HumanOrganAtlas/hoa-toolsPython tools for working with Human Organ Atlas data
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 3, 2025 -
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ngvolbox Public
Script to replace volumes by their bounding box in a Neuroglancer link or state
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cardiotensor Public
Forked from JosephBrunet/cardiotensorToolkit designed for quantifying 3D cardiomyocytes orientations in heart images
Python MIT License UpdatedMay 9, 2025 -
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nitorch Public
Forked from balbasty/nitorchNeuroimaging in PyTorch
Python Other UpdatedMar 5, 2025 -
trk_to_neuroglancer Public
Notebook for conversion from the TRK streamline format to the Neuroglancer precomputed skeleton format
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 1, 2024 -
bids-xpct-example Public archive
Forked from bids-standard/bids-examplesA set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
MATLAB UpdatedAug 6, 2024 -
bids-xpct-suffix Public archive
Forked from bids-standard/bids-specificationBrain Imaging Data Structure (BIDS) Specification
Python Creative Commons Attribution 4.0 International UpdatedMay 16, 2024 -
scifio-edf Public
Forked from scifio/scifio-lifesciSCIFIO plug-in providing support for European Data Format.
Java GNU General Public License v2.0 UpdatedFeb 14, 2024 -
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Amira-Avizo_custom_modules Public
Python scripts developped for integration as custom modules in Amira-Avizo (Thermo Fisher Scientific Inc.)
3 UpdatedApr 25, 2023
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