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penzai Public
Forked from google-deepmind/penzaiA JAX research toolkit for building, editing, and visualizing neural networks.
Python Apache License 2.0 UpdatedApr 19, 2024 -
DeProt Public
Code for DeProt. A protein language model with quantizied structure and disentangled attention
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PPIRef Public
Forked from anton-bushuiev/PPIRefWorking with protein-protein interactions in 3D
Jupyter Notebook MIT License UpdatedApr 17, 2024 -
RoseTTAFold-All-Atom Public
Forked from baker-laboratory/RoseTTAFold-All-AtomPython UpdatedApr 16, 2024 -
alphaflow Public
Forked from bjing2016/alphaflowAlphaFold Meets Flow Matching for Generating Protein Ensembles
Python MIT License UpdatedApr 11, 2024 -
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ACPI Public
Forked from salimamoukou/ACPIAdaptive Conformal Prediction Intervals (ACPI) is a Python package that enhances the Predictive Intervals provided by the split conformal approach by employing a weighting strategy.
Jupyter Notebook MIT License UpdatedApr 8, 2024 -
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FrustraEvo Public
Forked from proteinphysiologylab/FrustraEvoPython GNU General Public License v3.0 UpdatedApr 4, 2024 -
ligand_mpnn_jax Public
an ongoing attempt to port the pytorch ligand MPNN code to jax
Python UpdatedApr 1, 2024 -
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logit-gfn Public
Forked from dbsxodud-11/logit-gfnOfficial Code for Learning to Scale Logits for Temperature-conditional GFlowNets (ICML 2024)
Python UpdatedMar 26, 2024 -
ELViM Public
Forked from VLeiteGroup/ELViMELViM is a method for visualizing the energy landscapes of biomolecules simulations.
Python UpdatedMar 20, 2024 -
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repeng Public
Forked from vgel/repengA library for making RepE control vectors
Jupyter Notebook MIT License UpdatedMar 10, 2024 -
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rf_diffusion_all_atom Public
Forked from baker-laboratory/rf_diffusion_all_atomPublic RFDiffusionAA repo
Python UpdatedMar 9, 2024 -
ColabDesign Public
Forked from sokrypton/ColabDesignMaking Protein Design accessible to all via Google Colab!
Python UpdatedMar 9, 2024 -
confidence-bootstrapping Public
Forked from LDeng0205/confidence-bootstrappingImplementation of the Confidence Bootstrapping procedure for protein-ligand docking.
Python MIT License UpdatedFeb 29, 2024 -
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two-state-stabilization Public
Forked from strauchlab/two-state-stabilizationPython UpdatedFeb 15, 2024 -
LigandDiff Public
Forked from Neon8988/LigandDiffLigandDiff
Python MIT License UpdatedFeb 12, 2024 -
dirichlet-flow-matching Public
Forked from HannesStark/dirichlet-flow-matchingPython UpdatedFeb 9, 2024 -
DynamicBind Public
Forked from luwei0917/DynamicBindrepo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
Jupyter Notebook MIT License UpdatedFeb 6, 2024 -
AF-CBA-pipeline Public
Forked from PDNALab/AF-CBA-pipeline3 stage filtering pipeline for finding binding epitopes
Python UpdatedFeb 4, 2024 -
linear_rep_geometry Public
Forked from KihoPark/linear_rep_geometryJupyter Notebook UpdatedJan 30, 2024 -
lecture2 Public
Forked from gpu-mode/lectureslecture 2 - 2024-01-20
Jupyter Notebook UpdatedJan 28, 2024 -
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