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gau2grid Public
Forked from dgasmith/gau2gridFast computation of a gaussian and its derivative on a grid.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 18, 2024 -
chai-lab Public
Forked from chaidiscovery/chai-labChai-1, SOTA model for biomolecular structure prediction
Python Other UpdatedSep 13, 2024 -
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RFdiffusion Public
Forked from sokrypton/RFdiffusionCode for running RFdiffusion
Python Other UpdatedAug 25, 2024 -
alphafold3-pytorch Public
Forked from lucidrains/alphafold3-pytorchImplementation of Alphafold 3 in Pytorch
Python MIT License UpdatedAug 15, 2024 -
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e3nn.c Public
Forked from teddykoker/e3nn.cPure C implementation of e3nn
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concurrent_agent_executor Public
An concurrent runtime for tool-enhanced language agents
Python MIT License UpdatedJul 5, 2024 -
proteinmpnn_ddg Public
Forked from PeptoneLtd/proteinmpnn_ddgNovel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
Python MIT License UpdatedJun 20, 2024 -
InfGCN-pytorch Public
Forked from ccr-cheng/InfGCN-pytorchOfficial implementation of the NeurIPS 23 spotlight paper of ♾️InfGCN♾️.
Jupyter Notebook MIT License UpdatedJun 19, 2024 -
masif-neosurf Public
Forked from LPDI-EPFL/masif-neosurfMaSIF-neosurf: surface-based protein design for ternary complexes.
Python Apache License 2.0 UpdatedJun 6, 2024 -
LieNeurons Public
Forked from UMich-CURLY/LieNeuronsAdjoint-Equivariant Neural Network for Semi-Simple Lie Algebras
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 5, 2024 -
live-typescript-monorepo Public
Forked from colinhacks/live-typescript-monorepoStrategies for live-updating TypeScript types in monorepos
TypeScript UpdatedMay 31, 2024 -
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chroma Public
Forked from generatebio/chromaA generative model for programmable protein design
Python Apache License 2.0 UpdatedMay 21, 2024 -
avoidome-analysis Public
Forked from choderalab/avoidome-analysisA repository for downloading and analyzing the available Avoidome structures
Jupyter Notebook MIT License UpdatedMay 17, 2024 -
misato-dataset Public
Forked from t7morgen/misato-datasetJupyter Notebook GNU Lesser General Public License v2.1 UpdatedMay 13, 2024 -
ludwig Public
Forked from ludwig-ai/ludwigLow-code framework for building custom LLMs, neural networks, and other AI models
Python Apache License 2.0 UpdatedMay 6, 2024 -
BasisLib Public
Forked from atomicarchitects/BasisLibYour favorite basis functions for equivariant models in one place. Code borrowed from e3x
Python MIT License UpdatedMay 6, 2024 -
pyDDM Public
Forked from GaudetLab/pyDDMCode to build and analyze distance difference matrices (DDMs) to compare protein conformations. Also contains all code associated with "They all rock: A systematic comparison of conformational move…
Jupyter Notebook MIT License UpdatedApr 21, 2024 -
penzai Public
Forked from google-deepmind/penzaiA JAX research toolkit for building, editing, and visualizing neural networks.
Python Apache License 2.0 UpdatedApr 19, 2024 -
DeProt Public
Code for DeProt. A protein language model with quantizied structure and disentangled attention
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PPIRef Public
Forked from anton-bushuiev/PPIRefWorking with protein-protein interactions in 3D
Jupyter Notebook MIT License UpdatedApr 17, 2024 -
RoseTTAFold-All-Atom Public
Forked from baker-laboratory/RoseTTAFold-All-AtomPython UpdatedApr 16, 2024 -
alphaflow Public
Forked from bjing2016/alphaflowAlphaFold Meets Flow Matching for Generating Protein Ensembles
Python MIT License UpdatedApr 11, 2024 -
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ACPI Public
Forked from salimamoukou/ACPIAdaptive Conformal Prediction Intervals (ACPI) is a Python package that enhances the Predictive Intervals provided by the split conformal approach by employing a weighting strategy.
Jupyter Notebook MIT License UpdatedApr 8, 2024 -