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  • University of California, Berkeley
  • Berkeley, CA

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  1. Nanoreactor + Langevin Integrator fo... Nanoreactor + Langevin Integrator for the Atomic Simulation Environment (ASE)
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    """ Nanoreactor + Langevin Integrator
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    Wang, LP., Titov, A., McGibbon, R. et al. Discovering chemistry with an ab initio nanoreactor. Nature Chem 6, 1044-1048 (2014). https://doi.org/10.1038/nchem.2099
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    """
  2. Monte Carlo Barostat + Langevin Inte... Monte Carlo Barostat + Langevin Integrator for the Atomic Simulation Environment (ASE)
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    """ Monte Carlo Barostat + Langevin Integrator
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    Based on:
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    OpenMM implementation
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    https://github.com/openmm/openmm/blob/master/openmmapi/src/MonteCarloBarostatImpl.cpp
  3. SmileyMCPB SmileyMCPB Public

    An MCP bundle toolkit for manipulating and interpreting SMILES strings

    Python 2

  4. torchpose3d torchpose3d Public

    Forked from jewettaij/superpose3d

    A PyTorch implementation of Superpose3D for rigid-body point cloud alignment (rotation, translation, optional scale).

    Python