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Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…

Python 85 47 Updated Aug 17, 2023

Viral genome coverage evaluation for metagenomic diagnostics 🩸

Rust 27 4 Updated Oct 28, 2024

Tools for plotting methylation data in various ways

Python 130 10 Updated Sep 30, 2024

Repository with all my container recipes 👩‍🍳

Dockerfile 15 6 Updated Sep 9, 2024

A segmentation toolkit for segment the Nanopore RNA signal.

Python 18 2 Updated Jun 30, 2024

real-time stream processing of DNA nanopore sequencer reads with dataflow

Vue 27 9 Updated Jan 9, 2023

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

C 510 94 Updated Sep 27, 2023

Long sequencing reads classifier

Python 7 4 Updated Sep 7, 2021

Real-time species-typing visualisation for nanopore data.

JavaScript 13 4 Updated Apr 11, 2023

A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.

Python 19 Updated Apr 21, 2018

A basecaller for Oxford Nanopore Technologies' sequencers

Python 122 53 Updated Jul 6, 2023

Profile haploid somatic copy number alterations,especially for NGS sequencing data on significantly contaminated tumor samples

R 8 2 Updated Apr 1, 2019
Java 15 2 Updated Jun 30, 2022