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lh3 / bwa Public

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Fork 561
Star 1.7k

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Issues 72
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Bwa-Mem and tied pair-placements#42

Open

boukn wants to merge 5 commits intolh3:masterlh3/bwa:masterfrom

boukn:masterboukn/bwa:masterCopy head branch name to clipboard

Conversation Commits5 (5)Checks Files changed

Open

Bwa-Mem and tied pair-placements#42
boukn wants to merge 5 commits intolh3:masterfrom
boukn:master

Commits

Commits on May 4, 2015

Added bwa_verbose lines for pairing stuff
boukn
committed
mem_pair will now return ties in 'zv'
boukn
committed

Commits on May 5, 2015

Added to mem_sam_pe, support for putting the ties in the SAM output
boukn
committed
Bugfixed the ties, for secondary flags and stuff.
boukn
committed

Commits on May 6, 2015

Indent fixes
boukn
committed

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