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Repository for submitting SHREC 2025: Protein Shape Classification track
A planet-like static website to track bioinformatics blogs around the world
This repository contains the code used to prepare materials for the AI2050 Workshop at the H3D Foundation in June 2025.
Targeted protein degradation in Mycobacterium Tuberculosis
scikit-learn classes for molecular vectorization using RDKit
Collection of Rust Books in PDF format.
Create literature notes in Obsidian from BibTeX entries, display formatted reference lists, and instantly generate citations.
A syntax-highlighting pager for git, diff, grep, and blame output
Create, manage, and run Jupyter notebooks with their dependencies
With one command, create a natural-sounding audiobook from a variety of input formats (epub, mobi, txt, PDF, HTML and more!)
A short course on proteins and protein design aimed at early career students
The modern API client that lives in your terminal.
🔍 A Hex Editor for Reverse Engineers, Programmers and people who value their retinas when working at 3 AM.
A fast, lightweight Java library for creating Scalable Vector Graphics (SVG) output.
A rich terminal UI for GitHub that doesn't break your flow.
Implementation of the Pairformer model used in AlphaFold 3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
A book about category theory
Qdrant - High-performance, massive-scale Vector Database and Vector Search Engine for the next generation of AI. Also available in the cloud https://cloud.qdrant.io/
A new markup-based typesetting system that is powerful and easy to learn.
The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.
Resources for learning Category Theory for an enthusiast
Application of formal systems to model biological systems
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
A debugging and profiling tool that can trace and visualize python code execution
View disk space usage and delete unwanted data, fast.