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Rt-without-renewal Public
Forked from CDCgov/Rt-without-renewal -
hpru-ppie-kickoff Public
PPIE kick-off presentation for HPRU Theme 2: Health Forecasting and Scenario Analysis
HTML UpdatedSep 11, 2025 -
claude-code-config Public
Personal Claude Code configuration with agents and commands
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pluto-notebooks Public
Interactive Julia notebooks with PlutoPages deployment
Julia UpdatedAug 18, 2025 -
sismid-ili-forecasting-sandbox Public
Forked from reichlab/sismid-ili-forecasting-sandboxA hubverse-style repository for collecting forecasts of influenza-like illness
R MIT License UpdatedJul 18, 2025 -
EpiEstim Public
Forked from mrc-ide/EpiEstimA tool to estimate time varying instantaneous reproduction number during epidemics
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presentations Public
A repository containing presentations that I have given or that I am in the process of writing
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fitdistrplus Public
Forked from lbbe-software/fitdistrplusHelp to Fit of a Parametric Distribution to Non-Censored or Censored Data
R UpdatedOct 1, 2024 -
touchstone Public
Forked from lorenzwalthert/touchstoneSmart benchmarking of pull requests with statistical confidence
R Other UpdatedSep 23, 2024 -
prob-epi Public
Forked from elizavetasemenova/prob-epiCourse materials of "Bayesian Modelling and Probabilistic Programming" with NumPyro, initially created for "AI for Science" MSc at African Institute for Mathematical Sciences (AIMS)
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An example of how to modify epinowcast to work with fixed reporting schedules.
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cste-forecasting-workshop Public
An approachable introduction to estimating the effective reproduction number. It's meant for any and all levels of comfort with writing code
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Term.jl Public
Forked from FedeClaudi/Term.jlJulia library for stylized terminal output
Julia MIT License UpdatedApr 24, 2024 -
provoc Public
Forked from phac-nml-phrsd/provocPROportions of Variants of Concern using counts, coverage, and a variant matrix.
R Other UpdatedApr 10, 2024 -
ecdc-weekly-growth-forecasts Public
COVID-19 cases forecasts for the ECDC Forecast Hub
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ICRTC-methods Public
Forked from OvertonC/ICRTC-methodsMethods for correcting the interval censoring and right truncation in time delays data
Stan UpdatedNov 3, 2023 -
TweetRstudioCheatsheets Public
A Twitter bots which tweets a randomly selected Rstudio cheatsheet each day
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regional-secondary Public
Prototype function for forecasting a secondary observation from a primary observation across multiple regions. An example application of this function can be found here: https://github.com/epiforec…
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ici3d-pkg Public
Forked from ICI3D/ici3d-pkgR package for DAIDD and MMED clinics
R UpdatedJun 26, 2023 -
ICI3D.github.io Public
Forked from ICI3D/ICI3D.github.ioInternational Clinics on Infectious Disease Dynamics and Data (ICI3D) Program
JavaScript Other UpdatedJun 20, 2023 -
badtobetter Public
Better computational practice - Bad to better
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RPkg.jl Public
Forked from athulsudheesh/RPkg.jlJulia Style Package Manager for RCall users
Julia MIT License UpdatedJan 10, 2023 -
80-percent-good-enough Public
What is 80% good enough for real-time analyses during the COVID-19 pandemic
HTML UpdatedSep 20, 2022
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