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Starred repositories
DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps
Open source implementation of AlphaFold3
An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
A plugin template for Zotero.
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑🔬
Automatic atomic model building program for cryo-EM maps
The Persistence of Vision Raytracer: http://www.povray.org/
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
DiffModeler: a diffusion model based protein complex structure modeling tool.
Emap2sec is a computational tool to identify protein secondary structures
Create a custom GPT for your organization with file search. This demo shows how to create an assistant, set up a vector store, upload and connect files to it, link the store to the assistant, creat…
Fast protein backbone generation with SE(3) flow matching.
macromolecular crystallography library and utilities
An innovative superfamily of fonts for code
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
A Rust implementation of the LightDock macromolecular docking software
RoseTTAFold2 protein/nucleic acid complex prediction
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.