Tags: talmolab/sleap
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Migrate to `mkdocs` for sleap documentation (#2367) * Modify mkdocs.yml and docs.yml * Change docs to mkdocs * Change docs workflow to uv * Remove path filters * Fix docs.yml * Fix docs.yml * Add branches * Run with uv * Fix links * Fix redirect links * Fix docs sleap.ai links * Add API references * Modify CLI docs * Modify colab to use sleap-nn and sleap-io * change: uv installation integration * change: remove unnecessary warning * change: comment out conda related setup * change: remove conda setup steps & replace w/ uv * fix: add tip to copy entire instance * fix: additional reminder for pip installation * fix: add help flag shortcut to train/track * fix: include yaml config format * change: add `uv run` reminder & remove deprecated sleap-render args * Update guides and learnings * change: update features to include nn and io & uv quick install * fix: remove deprecated CLI feature desc. from sleap-inspect * fix: ruff error * Add note to point to sleap-nn cli * Update training notebooks * change: update uv installation instructions for uv tool install/uvx/uv sync * fix: change quick install to quick start and use uvx * Add what's new section * change: typos and moving around info boxes * change: uv installation steps revamp (platform-specific/installation verification * Update model evaluation notebook * fix: reformat tip about uv pip * fix: highlight use of YAML config * fix: highlight that uvx is only invocation, not installation --------- Co-authored-by: AmickL <amickl29@yahoo.com> Co-authored-by: AmickL <107519741+alicup29@users.noreply.github.com> Co-authored-by: Talmo Pereira <talmo@salk.edu>
Updated trail length viewing options (#1822) * updated trail length optptions * Updated trail length options in the view menu * Updated `prefs` to include length info from `preferences.yaml` * Added trail length as method of `MainWindow` * Updated trail length documentation * black formatting --------- Co-authored-by: Keya Loding <keya@Keyas-MacBook-Air.local>
Upgrade build actions for release (#1779) * update `build.yml` so it matches updates from `build_manual.yml` * test `build.yml` without uploading * test again using build_manual.yml * build pip wheel with Ubuntu and turn off caching so build.yml exactly matches build_manual.yml * `build.yml` on release only and upload * testing caching * `use-only-tar-bz2: true` makes environment unsolvable, change it back * Update .github/workflows/build_manual.yml Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com> * Update .github/workflows/build.yml Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com> * bump pre-release version * fix version for pre-release * run build and upload on release! * try setting `CACHE_NUMBER` to 1 with `use-only-tar-bz2` set to true * increasing the cache number to reset the cache does work when `use-only-tar-bz2` is set to true * publish and upload on release only --------- Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com>
Fix conda builds (#1776) * test conda packages in a test environment as part of CI * do not test sleap import using conda build * use github environment variables to define build path for each OS in the matrix and add print statements for testing * figure out paths one OS at a time * github environment variables work in subsequent steps not current step * use local builds first * print env info * try simple environment creation * try conda instead of mamba * fix windows build path * fix windows build path * add comment to reference pull request * remove test stage from conda build for macs and test instead by creating the environment in a workflow * test workflow by pushing to current branch * test conda package on macos runner * Mac build does not need nvidia channel * qudida and albumentations are conda installed now * add comment with original issue * use python 3.9 * use conda match specifications syntax * make print statements more readable for troubleshooting python versioning * clean up build file * update version for pre-release * add TODO * add tests for conda packages before uploading * update ci comments and branches * remove macos test of pip wheel since python 3.9 is not supported by setup-python action
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