indel

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Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

bioinformatics genetics plink bed variant snv genotype indel

Genome assembly and variant benchmarks for Chinese Quartet

Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.

genomics vcf variants snv indel

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