Tools for computation on batch systems
🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools
slurmR: A Lightweight Wrapper for Slurm
R functions for project setup, data cleaning, machine learning, SuperLearner, parallelization, and targeted learning.
SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage
Workshop on HPC with Slurm, R, and the slurmR package
🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]
RNA-seq alignment and analysis pipeline
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
Repo to demonstrate how to launch parallelized array job in Slurm
Intermedate Slurm Workshop source code using the Software Carpentry Workbench style.
Testing parallel file creation using SLURM
R package for talking to the HPC cluster at the University of Cologne
Scripts to Install R packages on the NeSI Pan Cluster
Interactive ATAC-seq peak analysis app in R Shiny—annotation, motif enrichment, machine learning, and more. Singularity/HPC ready.
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