# coding: utf-8

from setuptools import setup, find_packages

from setuptools.extension import Extension

from distutils.extension import Extension

from codecs import open

from os import path

import glob

import re

import sys

here = path.abspath(path.dirname("__file__"))

with open(path.join(here, "DESCRIPTION.md"), encoding="utf-8") as description:

description = long_description = description.read()

name="stag"

version = [line.strip().split(" ")[-1] for line in open("stag/__init__.py") if line.startswith("__version__")][0]

if sys.version_info.major != 3:

raise EnvironmentError("""{toolname} is a python module that requires python3, and is not compatible with python2.""".format(toolname=name))

setup(

name=name,

version=version,

description="stag - Supervised Taxonomic Assignment of marker Genes",

long_description=long_description,

url="https://github.com/zellerlab/stag",

author="Alessio Milanese",

author_email="milanese.alessio@gmail.com",

license="GPLv3+",

classifiers=[

"Development Status :: 4 - Beta",

"Topic :: Scientific Engineering :: Bio/Informatics",

"License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",

"Operating System :: POSIX :: Linux",

"Programming Language :: Python :: 3.7"

],

zip_safe=False,

keywords="",

packages=find_packages(exclude=["test"]),

install_requires=[

"h5py",

"regex",

"scikit-learn",

"numpy",

"pandas"

],

entry_points={

"console_scripts": [

"stag=stag.__main__:main",

"stag_test=stag.stag_test:main",

"stag_test_short=stag.stag_test_short:main"

],

},

scripts=[],

package_data={

"stag.test": ["gene.hmm", "sequences.fasta", "sequences.taxonomy"]

},

include_package_data=True,

data_files=[],

)