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Zeller Lab

Projects Relating to the Zeller Team's Research of Host-Microbiota Interactions

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  1. GECCO GECCO Public

    GEne Cluster prediction with COnditional random fields.

    Python 89 9

  2. siamcat siamcat Public

    R package for Statistical Inference of Associations between Microbial Communities And host phenoType

    R 60 16

  3. cayman cayman Public

    A command-line tool for profiling CAZyme abundances in metagenomic datasets.

    Python 43 6

  4. crc_meta crc_meta Public

    Code and analysis results for the CRC shotgun meta-analysis

    R 41 31

  5. IGUA IGUA Public

    Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.

    Python 25 3

  6. CHAMOIS CHAMOIS Public

    Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

    Python 13 1

Repositories

Showing 10 of 27 repositories
  • cayman Public

    A command-line tool for profiling CAZyme abundances in metagenomic datasets.

    zellerlab/cayman's past year of commit activity
    Python 43 MIT 6 3 0 Updated Sep 23, 2026
  • ZellerLab.github.io Public Forked from NBCLab/NBCLab.github.io

    Website for the Zeller Lab

    zellerlab/ZellerLab.github.io's past year of commit activity
    HTML 1 44 4 0 Updated Sep 20, 2026
  • siamcat Public

    R package for Statistical Inference of Associations between Microbial Communities And host phenoType

    zellerlab/siamcat's past year of commit activity
    R 60 16 10 1 Updated Sep 3, 2026
  • flexprofiler Public

    Highly parallelised multi-taxonomic profiling of shotgun and 16S metagenomic data

    zellerlab/flexprofiler's past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Aug 27, 2026
  • IGUA Public

    Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.

    zellerlab/IGUA's past year of commit activity
    Python 25 GPL-3.0 3 1 0 Updated Aug 19, 2026
  • GECCO Public

    GEne Cluster prediction with COnditional random fields.

    zellerlab/GECCO's past year of commit activity
    Python 89 GPL-3.0 9 6 0 Updated Jul 29, 2026
  • CHAMOIS Public

    Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

    zellerlab/CHAMOIS's past year of commit activity
    Python 13 GPL-3.0 1 0 0 Updated Jun 4, 2026
  • crc-meta-ii Public
    zellerlab/crc-meta-ii's past year of commit activity
    R 3 0 0 0 Updated May 11, 2026
  • zellerlab/gut-microbial-metabolism-of-immunosuppressants's past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated May 4, 2026
  • cayman_paper Public
    zellerlab/cayman_paper's past year of commit activity
    R 1 0 0 0 Updated Mar 3, 2026

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